Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_L05
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0784 - 23130783-23131273,23131701-23131778,23131913-231319...    36   0.037
03_06_0640 + 35230664-35231065,35231957-35232202                       30   1.8  
05_05_0393 - 24632570-24632629,24633212-24633370,24633496-246336...    29   3.2  
07_01_1106 - 10187609-10190041,10190292-10191932                       27   9.7  

>12_02_0784 -
           23130783-23131273,23131701-23131778,23131913-23131969,
           23132062-23132116,23132738-23133010
          Length = 317

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 24/106 (22%), Positives = 44/106 (41%)
 Frame = -2

Query: 489 KMPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHK 310
           +M  YE+  L+      E++  + ++   + +  G I  + N G R + YK        +
Sbjct: 128 RMRHYEVVYLIHEDRVEEVEDVVSKVQDFVREKKGRIWRLNNWGLRRLAYKIKKA----R 183

Query: 309 EANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACT 172
            ANY +   +   K + D K    +D  I+R    K  E   + C+
Sbjct: 184 HANYILMNFEIQAKYINDFKTLLDKDERIIRHLVMKRDEAITEDCS 229


>03_06_0640 + 35230664-35231065,35231957-35232202
          Length = 215

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
 Frame = -2

Query: 477 YELALLLR-NMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPY----KSTAHGM-- 319
           YE  ++LR +M + E    ++R    +   G +   + N G  P+ Y    +++  G+  
Sbjct: 110 YETMVVLRPDMSEEERLALIQRYEELLVAGGAMYVEVFNRGVIPLAYSIRKRNSRTGLPS 169

Query: 318 THKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEE 187
           T+ +  Y +    T  +++  L+     D D++R   FKV++ +
Sbjct: 170 TYYDGIYLLVTYFTKPESLDALQMRLNADDDVIRSTSFKVRKRK 213


>05_05_0393 -
           24632570-24632629,24633212-24633370,24633496-24633612,
           24633697-24633831,24634140-24634337,24634449-24634529,
           24634845-24635141,24635231-24636013,24636589-24636765
          Length = 668

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = -2

Query: 591 TTENTAKTPNSKFTQFEINTSKFVFQTLYVIIRIKMPTYELALLLRNMPKPELKTSLKRI 412
           T     K PN  +   +    +F   TL +  R    T++L  +L+   K  + T +K +
Sbjct: 131 TKNPCGKVPNQLYLAMDTLADEFGIGTLRLTTR---QTFQLHGVLKKNLKTVISTVIKNM 187

Query: 411 SHAIFDCGGIIRNI 370
             ++  CG + RN+
Sbjct: 188 GSSLGACGDLNRNV 201


>07_01_1106 - 10187609-10190041,10190292-10191932
          Length = 1357

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 498 IRIKMPTYELALLLRNMPKPELKTSLKRISHAIFDCGGII 379
           IR  +PT +  + LR++  P  +      SH I  C G++
Sbjct: 259 IRDTIPTLDALIQLRSLSDPVFRIPAAATSHCILLCRGVL 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,941,903
Number of Sequences: 37544
Number of extensions: 273484
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)