Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_L05
         (649 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC051302-1|AAH51302.1|  125|Homo sapiens mitochondrial ribosomal...    93   6e-19
BC010076-1|AAH10076.1|  125|Homo sapiens mitochondrial ribosomal...    93   6e-19
BC004976-1|AAH04976.2|  125|Homo sapiens mitochondrial ribosomal...    93   6e-19
BC000547-1|AAH00547.2|  125|Homo sapiens mitochondrial ribosomal...    93   6e-19
AY061855-1|AAL35739.1|  125|Homo sapiens mitochondrial ribosomal...    93   6e-19
AB049942-1|BAB40995.1|  166|Homo sapiens mitochondrial ribosomal...    93   6e-19
BC042752-1|AAH42752.1|   96|Homo sapiens MRPS6 protein protein.        63   7e-10
AB051347-1|BAB54937.1|   35|Homo sapiens mitochondrial ribosomal...    40   0.010

>BC051302-1|AAH51302.1|  125|Homo sapiens mitochondrial ribosomal
           protein S6 protein.
          Length = 125

 Score = 93.5 bits (222), Expect = 6e-19
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
 Frame = -2

Query: 486 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 307
           MP YELAL+L+ M +PE   +LKR   A+ D G I+R++ENLG R +PY+ +AH   H  
Sbjct: 1   MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60

Query: 306 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFK-VKEEERKAC 175
             YF+     PT AV  + E   RD+D++R    K    +E K C
Sbjct: 61  GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKEC 105


>BC010076-1|AAH10076.1|  125|Homo sapiens mitochondrial ribosomal
           protein S6 protein.
          Length = 125

 Score = 93.5 bits (222), Expect = 6e-19
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
 Frame = -2

Query: 486 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 307
           MP YELAL+L+ M +PE   +LKR   A+ D G I+R++ENLG R +PY+ +AH   H  
Sbjct: 1   MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60

Query: 306 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFK-VKEEERKAC 175
             YF+     PT AV  + E   RD+D++R    K    +E K C
Sbjct: 61  GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKEC 105


>BC004976-1|AAH04976.2|  125|Homo sapiens mitochondrial ribosomal
           protein S6 protein.
          Length = 125

 Score = 93.5 bits (222), Expect = 6e-19
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
 Frame = -2

Query: 486 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 307
           MP YELAL+L+ M +PE   +LKR   A+ D G I+R++ENLG R +PY+ +AH   H  
Sbjct: 1   MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60

Query: 306 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFK-VKEEERKAC 175
             YF+     PT AV  + E   RD+D++R    K    +E K C
Sbjct: 61  GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKEC 105


>BC000547-1|AAH00547.2|  125|Homo sapiens mitochondrial ribosomal
           protein S6 protein.
          Length = 125

 Score = 93.5 bits (222), Expect = 6e-19
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
 Frame = -2

Query: 486 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 307
           MP YELAL+L+ M +PE   +LKR   A+ D G I+R++ENLG R +PY+ +AH   H  
Sbjct: 1   MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60

Query: 306 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFK-VKEEERKAC 175
             YF+     PT AV  + E   RD+D++R    K    +E K C
Sbjct: 61  GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKEC 105


>AY061855-1|AAL35739.1|  125|Homo sapiens mitochondrial ribosomal
           protein S6 protein.
          Length = 125

 Score = 93.5 bits (222), Expect = 6e-19
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
 Frame = -2

Query: 486 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 307
           MP YELAL+L+ M +PE   +LKR   A+ D G I+R++ENLG R +PY+ +AH   H  
Sbjct: 1   MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60

Query: 306 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFK-VKEEERKAC 175
             YF+     PT AV  + E   RD+D++R    K    +E K C
Sbjct: 61  GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKEC 105


>AB049942-1|BAB40995.1|  166|Homo sapiens mitochondrial ribosomal
           protein S6 protein.
          Length = 166

 Score = 93.5 bits (222), Expect = 6e-19
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
 Frame = -2

Query: 486 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 307
           MP YELAL+L+ M +PE   +LKR   A+ D G I+R++ENLG R +PY+ +AH   H  
Sbjct: 42  MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 101

Query: 306 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFK-VKEEERKAC 175
             YF+     PT AV  + E   RD+D++R    K    +E K C
Sbjct: 102 GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKEC 146


>BC042752-1|AAH42752.1|   96|Homo sapiens MRPS6 protein protein.
          Length = 96

 Score = 63.3 bits (147), Expect = 7e-10
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
 Frame = -2

Query: 396 DCGGIIRNIENLGFRPMPYKSTAHGMTHKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVR 217
           D G I+R++ENLG R +PY+ +AH   H    YF+     PT AV  + E   RD+D++R
Sbjct: 2   DRGAIVRDLENLGERALPYRISAHSQQHNRGGYFLVDFYAPTAAVESMVEHLSRDIDVIR 61

Query: 216 QRFFK-VKEEERKAC 175
               K    +E K C
Sbjct: 62  GNIVKHPLTQELKEC 76


>AB051347-1|BAB54937.1|   35|Homo sapiens mitochondrial ribosomal
           protein S6 protein.
          Length = 35

 Score = 39.5 bits (88), Expect = 0.010
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -2

Query: 405 AIFDCGGIIRNIENLGFRPMPYKSTAHGMTH 313
           A+ D G I+R++ENLG R +PY+ +AH   H
Sbjct: 1   ALMDRGAIVRDLENLGERALPYRISAHSQQH 31


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,121,116
Number of Sequences: 237096
Number of extensions: 1455081
Number of successful extensions: 2799
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2799
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)