Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_L05
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z78540-3|CAB01735.2|  482|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      27   8.7  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    27   8.7  

>Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical
           protein T13F3.8 protein.
          Length = 212

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
 Frame = -2

Query: 516 QTLYVIIRIKMPTYELALLLRNMPKPELKTSLKRISHA-IFDCGGIIRNIENLGFRPMPY 340
           Q L +II + + T  L L  +   K + K  ++ +S   +    G+  N  N+G  P P 
Sbjct: 9   QLLQLIIWMSVLTASLHLC-KKKGKAKPKAKVREMSTVKMTTTTGLTTNNVNIG-NPAPE 66

Query: 339 KSTAHGMTHK--EANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERK 181
           +        K  E N    K D P K     +EE K++     ++  +VKEEE+K
Sbjct: 67  EKKKEEKVEKKPEENKEAEKKDEPKKEEEKKEEEKKKEEKKEEEKKEEVKEEEKK 121


>AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical
           protein F43E2.11 protein.
          Length = 165

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 283 YLKDKIVGFFVGHTMCSGLVRHWSKS*IFYVSDDSSAIEYSM 408
           +LK    GFFV H MC+G +       I  V +   A   +M
Sbjct: 8   FLKQGSTGFFVAHFMCAGFINQQQAEIIIRVPERPVAAAATM 49


>Z78540-3|CAB01735.2|  482|Caenorhabditis elegans Hypothetical
           protein C33G3.5 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 590 LLKILPRLPTQNLLNLKLIHRNLSSRLY 507
           +++ + R+PTQ +L  +L H+ L+SR Y
Sbjct: 149 IVREMIRVPTQEVLKQQLFHKILASRAY 176


>Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical
           protein R07B7.13 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 474 ELALLLRNMPKPELKTSLKRISHAIFDCGGI 382
           E A +L   PK   +T++K + H +F CG +
Sbjct: 225 EYAKMLDFFPKISKETAIKLVKHGLFMCGSL 255


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -2

Query: 351  PMPYKSTAHGMTHKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERK 181
            P P K  A     +E    I KI    K V+D + E +++ D  R R  + ++E+R+
Sbjct: 1051 PPPKKEPADEQPEREKEKLILKIPKMLKPVVDDRREDRKERDRDRDR-DRDRDEDRE 1106


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
            pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -2

Query: 351  PMPYKSTAHGMTHKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERK 181
            P P K  A     +E    I KI    K V+D + E +++ D  R R  + ++E+R+
Sbjct: 1051 PPPKKEPADEQPEREKEKLILKIPKMLKPVVDDRREDRKERDRDRDR-DRDRDEDRE 1106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,666,904
Number of Sequences: 27780
Number of extensions: 271623
Number of successful extensions: 628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)