Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_L03
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...   167   8e-42
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...   167   8e-42
U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...    83   2e-16
AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    59   3e-09
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    45   5e-05
Z73423-1|CAA97776.2|  492|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z77662-7|CAB01197.1|  349|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical...    28   4.9  
Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical p...    28   6.4  
Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical p...    28   6.4  
Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U50313-5|AAA92329.1|  270|Caenorhabditis elegans Palmitoyl prote...    27   8.5  
AY691522-1|AAU01161.1|  254|Caenorhabditis elegans palmitoyl pro...    27   8.5  
AC024859-27|AAK29978.4|  337|Caenorhabditis elegans Hypothetical...    27   8.5  

>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score =  167 bits (405), Expect = 8e-42
 Identities = 81/199 (40%), Positives = 127/199 (63%), Gaps = 2/199 (1%)
 Frame = -2

Query: 635 QHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATGC 459
           + R+ PY+  GGS  AI+G+++A++ +DTR++    +I TRD +K+  L+++ +L  +G 
Sbjct: 41  RQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGF 100

Query: 458 WCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDG 279
           + D L L ++LQ+R+  Y  ++   M+    A++LS  LYY+RFFPYY   +LAG+D  G
Sbjct: 101 YGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHG 160

Query: 278 KGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LTREKALALLK 102
           KG V+SYDPIG   R  + A G+A   + P LD QIG   +    E P LT ++A++L+K
Sbjct: 161 KGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMK 220

Query: 101 DVXISAAERDIYTGDSRYM 45
           D    AAER+I TGD  ++
Sbjct: 221 DSFRGAAEREISTGDKIHL 239


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score =  167 bits (405), Expect = 8e-42
 Identities = 81/199 (40%), Positives = 127/199 (63%), Gaps = 2/199 (1%)
 Frame = -2

Query: 635 QHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATGC 459
           + R+ PY+  GGS  AI+G+++A++ +DTR++    +I TRD +K+  L+++ +L  +G 
Sbjct: 41  RQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGF 100

Query: 458 WCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDG 279
           + D L L ++LQ+R+  Y  ++   M+    A++LS  LYY+RFFPYY   +LAG+D  G
Sbjct: 101 YGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHG 160

Query: 278 KGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LTREKALALLK 102
           KG V+SYDPIG   R  + A G+A   + P LD QIG   +    E P LT ++A++L+K
Sbjct: 161 KGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMK 220

Query: 101 DVXISAAERDIYTGDSRYM 45
           D    AAER+I TGD  ++
Sbjct: 221 DSFRGAAEREISTGDKIHL 239


>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 1/182 (0%)
 Frame = -2

Query: 605 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 426
           GG++VA+AGD+   I +D R+    +    DQKK+ K+++   +G  G   D  T+   +
Sbjct: 8   GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67

Query: 425 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 246
             R  +YE   N+++    +++M+S + Y  RF  Y+   ++AGLD   K  +   D IG
Sbjct: 68  MFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIG 127

Query: 245 -HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLTREKALALLKDVXISAAERDI 69
              A  +F A G+    L  + +N    +NM+       T +  L+ L+    S     +
Sbjct: 128 CVSAPRDFVAVGTGQEYLLGVCEN-FWRENMKPDELFEATAQSILSCLERDAASGWGAVV 186

Query: 68  YT 63
           YT
Sbjct: 187 YT 188


>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 39/144 (27%), Positives = 70/144 (48%)
 Frame = -2

Query: 605 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 426
           G +++A+  +   V+G D+R S G  I +R   K+  ++++ V+  +G   DT  +  + 
Sbjct: 23  GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82

Query: 425 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 246
           +  + +Y    NK +T    +Q+    LY  R      S ++AG D +  G VY+    G
Sbjct: 83  KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIPIGG 141

Query: 245 HCARHNFRAGGSAAAQLQPLLDNQ 174
             +R    A GS +  +Q  LD+Q
Sbjct: 142 FVSRQRSTASGSGSTFVQGFLDSQ 165


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
 Frame = -2

Query: 605 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 426
           G +IVA+A     V+GAD+R + G  I  +  +K+ KL+ES      G   D   +T++L
Sbjct: 46  GTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKML 105

Query: 425 QARMQMYE-HEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 249
              +++ E +   K+    A+ Q    +  Y+ +   Y+  ++ G+D  G   +Y     
Sbjct: 106 SGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYL--LIGGVDPTGPH-LYMCSAN 162

Query: 248 GHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLTR 126
           G      F A GS +     +L+    +   ++  E  + R
Sbjct: 163 GTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKLVQR 203


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 31/130 (23%), Positives = 56/130 (43%)
 Frame = -2

Query: 566 VIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNK 387
           ++  D+R S+G  I ++   K+  + +  V    G   D    TR++     +YE     
Sbjct: 84  IVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKT 143

Query: 386 SMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSA 207
           S+T  A ++  +  LY  R     V +++AG D  G   ++  D  G   +    + GS 
Sbjct: 144 SITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ-IFKVDSEGDRCQLKVCSVGSG 202

Query: 206 AAQLQPLLDN 177
           +     +LDN
Sbjct: 203 SLNAYGILDN 212


>Z73423-1|CAA97776.2|  492|Caenorhabditis elegans Hypothetical
           protein C03A3.2 protein.
          Length = 492

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +1

Query: 202 AAAEPPARKLWRAQCPIGS*LYT----HPLPSLSKPANTLDT*YGKNRL*YNIV 351
           AAA PPA          G  +Y     H +PSL  P  T D  +GK  L Y +V
Sbjct: 229 AAAHPPAYNFHGFGSLFGCAVYAFMCHHSIPSLITPMRTKDNVFGKIALVYGVV 282


>Z77662-7|CAB01197.1|  349|Caenorhabditis elegans Hypothetical
           protein F47B8.7 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
 Frame = +1

Query: 349 VESICATAGVVIDLLCSCSYICILACRRRVKVNVSHQQPVAPNT-VLSDNLN-----SFF 510
           V SI +    V+ L+ S   + ++ C  ++ + V   +  + N  VL   +N      FF
Sbjct: 218 VGSIMSAVAYVLTLILSI--LVMILCTIKINLKVRESKNSSNNLLVLQKKMNRVLLAQFF 275

Query: 511 WSLVYMENPVLRRVSAPITA*SSPAMATILPPLSA 615
             L++++ P    V  PI   S   +  +LP L A
Sbjct: 276 CPLIFIQAPFYYSVLGPIVGLSQGLVTDLLPLLFA 310


>AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical
           protein Y105C5A.24 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 261 LRPYRTLCAP*LPRWWFRCCTAATAPRQSNW-LKEYAECNRSSFD*GKGP 115
           LRP+   C P L  ++ RC +   A R ++    EY  C RS +  G  P
Sbjct: 259 LRPHEIECNPILSNFYKRCWSDNPASRPTSADCVEYFRCLRSEYPNGNVP 308


>Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical
           protein F13H10.4c protein.
          Length = 792

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 524 YTRDQKKLFKLSESTVLGATGCW 456
           YT+ Q K+ K+S S +LG+ G W
Sbjct: 337 YTKTQLKMAKVSLSNMLGSVGYW 359


>Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical
           protein F13H10.4b protein.
          Length = 789

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 524 YTRDQKKLFKLSESTVLGATGCW 456
           YT+ Q K+ K+S S +LG+ G W
Sbjct: 334 YTKTQLKMAKVSLSNMLGSVGYW 356


>Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical
           protein F13H10.4a protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 524 YTRDQKKLFKLSESTVLGATGCW 456
           YT+ Q K+ K+S S +LG+ G W
Sbjct: 341 YTKTQLKMAKVSLSNMLGSVGYW 363


>U50313-5|AAA92329.1|  270|Caenorhabditis elegans Palmitoyl protein
           thioesteraseprotein 1 protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 221 RGSYGAHSVR*GRNYIHIPYRRCPNPPTRWIRSMG 325
           +  Y A     G  ++    +RCPNPP + + S+G
Sbjct: 70  KNGYNAIGFSQGAQFLRAVAQRCPNPPMKNLVSVG 104


>AY691522-1|AAU01161.1|  254|Caenorhabditis elegans palmitoyl
           protein thioesterase protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 221 RGSYGAHSVR*GRNYIHIPYRRCPNPPTRWIRSMG 325
           +  Y A     G  ++    +RCPNPP + + S+G
Sbjct: 70  KNGYNAIGFSQGAQFLRAVAQRCPNPPMKNLVSVG 104


>AC024859-27|AAK29978.4|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.1 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 386 ICYARVRTSASSLVEDASRLMCHTSSQSLPIL 481
           +C++   T  + L+E   R M HTSS+ L I+
Sbjct: 231 LCFSLQETVFAMLIEITERAMAHTSSKELLIV 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,906
Number of Sequences: 27780
Number of extensions: 325699
Number of successful extensions: 1026
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)