Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_L01
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 136 2e-33
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 54 3e-08
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 32 0.089
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 29 0.48
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.63
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 27 1.9
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 27 3.4
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 27 3.4
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 27 3.4
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 25 7.8
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 136 bits (330), Expect = 2e-33
Identities = 67/139 (48%), Positives = 97/139 (69%), Gaps = 3/139 (2%)
Frame = -1
Query: 685 DRVNDALNATRAAVEEGIVPGGGSALLRCIPVLEQLKTVNSDQATGVEIVKKALRMPCMT 506
DR+ DALNA +AAV EG++PG G++ ++ L + T N DQ GVEIV+KA+ P T
Sbjct: 426 DRIVDALNAVKAAVSEGVLPGAGTSFVKASLRLGDIPTNNFDQKLGVEIVRKAITRPAQT 485
Query: 505 IAKNAGIDGSVVVAKVEDL-GDEF--GYDALNNEYVNMIEKGIIDPTKVVRTALTDASGV 335
I +NAG++G+++V K+++L G EF GYD + +V++ E G++DP KVVRT L DASGV
Sbjct: 486 ILENAGLEGNLIVGKLKELYGKEFNIGYDIAKDRFVDLNEIGVLDPLKVVRTGLVDASGV 545
Query: 334 ASLLTTAEAVICEIPQEKE 278
ASL+ T E I + P+E +
Sbjct: 546 ASLMGTTECAIVDAPEESK 564
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 53.6 bits (123), Expect = 3e-08
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Frame = -1
Query: 679 VNDALNATRAAVEEGIVP-GGGSALLRCIPVLEQLKTVN-SDQATGVEIVKKALRMPCMT 506
++DAL V E V GGG A + +E+ T +A V KAL
Sbjct: 386 IHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAKALSQLPTI 445
Query: 505 IAKNAGIDGSVVVAKVE----DLGDEFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASG 338
+A NAG D S +VA+++ D D G D E +M KGI++ K+ + ++ S
Sbjct: 446 LADNAGFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSE 505
Query: 337 VASLLTTAEAVICEIPQEKE 278
A LL + ++ P+ +E
Sbjct: 506 GAQLLLRVDTILKAAPRPRE 525
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.9 bits (69), Expect = 0.089
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Frame = +3
Query: 306 TASAVVS--SDATPLASVRAVRTTFVGSMMPFSIMF-TYSLLRASYPNSSPRSSTLATTT 476
T+S++ S S +TPL S + S S + T SLL +S P+S+P SS +TT
Sbjct: 241 TSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTA 300
Query: 477 EPSMPAFFAIVMHGILRAFFTISTPVA*SLLTVLSCSNTGIHLKSAEPPPGTIPSSTA 650
+ V T +T + + L+ +S +N+ ++ P ++ S+TA
Sbjct: 301 TSASSTPLTSVNS-------TTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTA 351
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +3
Query: 318 VVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTTEPSMPAF 497
++SS LA V + +TF+ ++P S+ + +S AS NSSP ++ + +
Sbjct: 343 LLSSLEMVLAFVGSTGSTFISFILPGSLYYFFSHKVASPGNSSPLQLRISRAFAAGLAIY 402
Query: 498 FAIVM 512
+VM
Sbjct: 403 GTVVM 407
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.63
Identities = 29/127 (22%), Positives = 58/127 (45%)
Frame = +3
Query: 279 SFSCGISQITASAVVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSS 458
+ S GIS + + SS ++ L+S + ++ S+ S T+S S P+S S
Sbjct: 559 TISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSI 618
Query: 459 TLATTTEPSMPAFFAIVMHGILRAFFTISTPVA*SLLTVLSCSNTGIHLKSAEPPPGTIP 638
+ ++T S + +M S+ ++ S+ T+ S+ + S P T+
Sbjct: 619 SSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLV 678
Query: 639 SSTAALV 659
SS+++L+
Sbjct: 679 SSSSSLI 685
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 605 QECRTTSRYNTFLNCSSSGI 664
Q+C SR+NT LN SS GI
Sbjct: 800 QQCIDLSRHNTLLNLSSYGI 819
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 298 HRSQLQQL*AVMQHHWHRSGLSAPPLWGQ 384
H + L Q+ AV +HH G+S P +GQ
Sbjct: 579 HDTPLSQIQAVTRHHSEYYGMSDPRKYGQ 607
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 184 KCIQDVHFMKITSCLPYHP 240
KC+ D + +I +C+PY P
Sbjct: 449 KCVADSGYQRIKACIPYVP 467
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 417 LLRASYPNSSPRSSTLATTTEPSMPAFFAIVMHGI-LRAFFTISTP 551
+ +A Y S RS LA FA+V HG+ +R F I P
Sbjct: 134 IYKADYKTSIQRSRVLAEFFAKVPEKVFAVVTHGVDIRLFQKIQKP 179
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = -3
Query: 617 FCTLE-MYS---SIRTTQNSQQ*SGHWCRDCKESSE 522
FC MY SI T +S+ +G WCR C+E E
Sbjct: 165 FCNFHSMYQIKLSIHATYDSE--NGFWCRVCRECYE 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,172
Number of Sequences: 5004
Number of extensions: 49570
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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