Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_K24
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...   119   3e-28
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    27   2.5  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   5.8  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score =  119 bits (287), Expect = 3e-28
 Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 8/178 (4%)
 Frame = -1

Query: 659 ILAIRLTEWVFGERGRLRVRNVDHHRQGEKEPS---SAYTITDTVVYRIEIEELKNGKWQ 489
           + A  LT WVF  +G L+  N+ + +  E   S   S Y I D +++ I+I  L++G+  
Sbjct: 255 LFARDLTNWVFQRKGVLQATNMTYGKVAEPLESRNASCYRIKDEMIFSIDISLLEDGQQT 314

Query: 488 PFEANDVQLEFVRIDPFIRTTLQKKPNGV-----YEAVFKVPDVWGVYQFKVDYDRVGYT 324
           P+ A+DVQLE + +DP+ R  L   P+       YEAV   PD +G + FK++Y R G T
Sbjct: 315 PYVADDVQLELIMLDPYYRVNLVPVPSDSQTSQHYEAVLVAPDHYGDFTFKIEYKRPGLT 374

Query: 323 RLYHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVFLFSFVFLYYKEDQPKTKS 150
            +   +  ++R   H ++ RF+P AYPYY S FS++    LF  ++L  K  +P   S
Sbjct: 375 PIEEKSTFTLRQFFHNEFPRFLPHAYPYYASCFSVLGAFLLFCGIWLLQKPAKPVVPS 432


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 440 FIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDRVGYTRLYHSTQVSVR 291
           F+  T+ ++P G +EA+  +     + +F   YD   Y  +Y S  V  R
Sbjct: 426 FLSVTIPERP-GSFEALHNIITPRSITEFSYRYDNDDYANIYTSFVVKDR 474


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 242 YYVSSFSMMIGVFLFSFVFLYYKEDQPKTKSE*M--KC*FVCNVYLMLNILSQ*VM 81
           Y +S  + +  +FL  F+ L  KED  K     +  +  F+ N Y +LN+L+  V+
Sbjct: 374 YNLSDLADVQAIFLSRFILLRKKEDCKKLLEHVLPIRQLFLLNCYSLLNVLANYVV 429


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 679 QMYQATRFSRFALLNGCLVSVGVYACAMSTITDKERRN--RPVPIPLQTLLYTELK 518
           ++Y    F + AL+  C V  G     M+ + D  + N   P+P+P   +  T+ K
Sbjct: 539 ELYSQEVFDKNALVERCYVFFGSNEHLMNWLKDLVKYNPANPIPVPRPRVDLTQCK 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,929
Number of Sequences: 5004
Number of extensions: 62385
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)