Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_K24
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591... 177 5e-45
06_01_0065 + 549972-550770,551577-552190,552392-552544,552769-55... 30 1.5
05_05_0258 - 23656473-23657828 29 3.4
02_05_0135 - 26165263-26165284,26165400-26165458,26165506-261657... 28 6.0
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 28 7.9
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 28 7.9
>07_01_0771 +
5917550-5917829,5918390-5918526,5918617-5918742,
5919168-5919221,5919344-5919457,5919895-5919950,
5920017-5920058,5920580-5920655,5920765-5920836,
5920908-5921033,5921117-5921221,5921333-5921416,
5921636-5921683
Length = 439
Score = 177 bits (432), Expect = 5e-45
Identities = 79/170 (46%), Positives = 110/170 (64%)
Frame = -1
Query: 683 KSDVSGXKILAIRLTEWVFGERGRLRVRNVDHHRQGEKEPSSAYTITDTVVYRIEIEELK 504
+ + +G + ++WVF ERG L+ NV H++ GE Y I D + Y +EI E
Sbjct: 270 RHEKAGNEQFVTETSKWVFHERGHLKAVNVKHNKVGETNEPGMYRINDDLEYSVEIYEWS 329
Query: 503 NGKWQPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDRVGYT 324
W+P+ A+DVQ++F + P++ TL GV+ FKVPDV+GV+QFKV+Y R+GYT
Sbjct: 330 GTSWKPYVADDVQVQFYMMSPYVLKTLSTDKKGVFSTSFKVPDVYGVFQFKVEYQRLGYT 389
Query: 323 RLYHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVFLFSFVFLYYK 174
L S Q+ VRP +H +YERFI SAYPYY +SFS M F+FSFV+LY+K
Sbjct: 390 GLSLSKQIPVRPYRHNEYERFITSAYPYYAASFSTMGAFFIFSFVYLYHK 439
>06_01_0065 +
549972-550770,551577-552190,552392-552544,552769-552885,
552972-553076,553269-553334,553430-553494,553577-553778,
554026-554169,554212-554340
Length = 797
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = -1
Query: 515 EELKNGKW-QPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPDV-W----GVYQF 354
E K+ W QP++AN+++ + +D F T +P+ E +PDV W G+
Sbjct: 444 ENSKHDWWRQPWDANEIEGLSITMDDFEEATKMVQPSLRREGFSSIPDVTWDDVGGLDSL 503
Query: 353 KVDYDR 336
+ ++DR
Sbjct: 504 RKEFDR 509
>05_05_0258 - 23656473-23657828
Length = 451
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 341 DRVGYTRLYHSTQVSVRPLQHTQYERFIP 255
DR R+ H +V+V+PLQH + R +P
Sbjct: 62 DRRTMARVCHDWRVAVKPLQHAPHRRPLP 90
>02_05_0135 -
26165263-26165284,26165400-26165458,26165506-26165721,
26166309-26166362,26167029-26167123,26167220-26167317,
26167413-26167555,26167900-26168031,26168695-26168823,
26169370-26169831
Length = 469
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 513 RAKEWQMAAFRSKRCAARVCANRPFYTHNFT 421
R K W++ F S+ CA FY+ +FT
Sbjct: 174 RNKGWRVVVFNSRGCAGSPVTTAKFYSASFT 204
>05_05_0042 -
21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Frame = -3
Query: 486 FRSKRCAARVCANR------PFYTHNFTKETQWRL*GCLQSSRCLGCLSVQSGLRQGRVY 325
F SKR ++ C PF+ NF+ + +R CL SSR LG S LR+ +
Sbjct: 487 FSSKRMCSQACVGNSSWEGWPFW--NFSPSSYFRNSSCLGSSRGLGVNSNFLRLRRQKNS 544
Query: 324 KTLSLNTGVSPPTTT 280
S+ + +S ++T
Sbjct: 545 NYSSMASSISSVSST 559
>02_04_0622 -
24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = -1
Query: 440 FIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDRVGYTRLYHSTQVSVRPLQHTQYERF 261
FI+T LQ+ G+ E + V ++ +D + ST + P Q+E +
Sbjct: 735 FIQTLLQQGQKGIQEVMQNFEKVMKLFFRYLDDPHHKVAQAAFSTLADIIPACKKQFESY 794
Query: 260 IPSAYPYYVS 231
+ PY S
Sbjct: 795 VERILPYVFS 804
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,439,700
Number of Sequences: 37544
Number of extensions: 382546
Number of successful extensions: 882
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -