Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_K24
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical pr... 220 9e-58
AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical... 29 3.1
Z32682-6|CAA83614.1| 200|Caenorhabditis elegans Hypothetical pr... 28 7.1
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family... 28 7.1
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family... 28 7.1
AF303262-1|AAG50220.1| 362|Caenorhabditis elegans gap junction ... 28 7.1
AF067219-9|AAX88822.1| 266|Caenorhabditis elegans Innexin prote... 28 7.1
AF067219-8|AAC17025.1| 362|Caenorhabditis elegans Innexin prote... 28 7.1
AC006730-1|AAK72090.1| 324|Caenorhabditis elegans Serpentine re... 28 7.1
Z81521-2|CAB04224.1| 514|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z68342-3|CAA92773.1| 751|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL117203-15|CAD57713.2| 670|Caenorhabditis elegans Hypothetical... 27 9.4
AL117203-14|CAD57712.2| 587|Caenorhabditis elegans Hypothetical... 27 9.4
AF076840-1|AAC95522.1| 514|Caenorhabditis elegans Rad17-like pr... 27 9.4
AF067937-7|AAN84819.1| 392|Caenorhabditis elegans Hypothetical ... 27 9.4
AF067937-6|AAF99915.1| 426|Caenorhabditis elegans Hypothetical ... 27 9.4
AC006633-6|AAK68378.4| 578|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical
protein T09A5.11 protein.
Length = 445
Score = 220 bits (537), Expect = 9e-58
Identities = 108/172 (62%), Positives = 123/172 (71%), Gaps = 1/172 (0%)
Frame = -1
Query: 671 SGXKILAIRLTEWVFGERGRLRVRNVDHHRQGEKEPS-SAYTITDTVVYRIEIEELKNGK 495
SG A +T WV E G LRV+ V+HH++GE P Y IT+ VVY IEIEELKNGK
Sbjct: 263 SGNADFATAITRWVMKESGVLRVKTVNHHKKGETVPPVEGYFITEDVVYTIEIEELKNGK 322
Query: 494 WQPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDRVGYTRLY 315
W PF+ DVQLEFVRIDPF+R TL K NG FK+PDV GV++F VDY RVGYT LY
Sbjct: 323 WVPFQGKDVQLEFVRIDPFVRATL-KNSNGRLSVAFKLPDVLGVFKFLVDYRRVGYTHLY 381
Query: 314 HSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVFLFSFVFLYYKEDQPK 159
QVSVRPL HTQYERFI SAYPYY SSFSMM G+ LFS V+LY+K+ K
Sbjct: 382 DVQQVSVRPLWHTQYERFIRSAYPYYASSFSMMAGLVLFSIVYLYHKDTPVK 433
>AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical
protein Y39G10AR.5 protein.
Length = 917
Score = 29.1 bits (62), Expect = 3.1
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = -1
Query: 524 IEIEELKNGKWQPFEAN---DVQL-EFVRIDPFIRTTLQKKPNGVYEAVFKVPDVWGVYQ 357
IEI K+ + P +A D+ L RI P + LQ V+EA+ + D +
Sbjct: 579 IEISRNKSHIFHPLDAKLVLDILLIASERILPLTSSALQHPCQAVWEAIQNLVD----QE 634
Query: 356 FK-VDYDRVGYTRLYHSTQVSVRP 288
F +DYD++G + + + +V +RP
Sbjct: 635 FDWLDYDQIGTSAMRFALEVYLRP 658
>Z32682-6|CAA83614.1| 200|Caenorhabditis elegans Hypothetical
protein M04D8.6 protein.
Length = 200
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 263 FIPSAYPYYVSSFSMMIGVFLFSFV 189
+IP YPY+++ F + I LF+ V
Sbjct: 51 YIPKYYPYFLNQFLLTIAFALFNIV 75
>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
protein 5, isoformb protein.
Length = 1306
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 508 SSSISILYTTVSVMV*ALDGSFSPCL*WSTLRTRKRPRSPNTHS 639
+S+I ++ V+V + A+ G + C+ WS +T +R S +HS
Sbjct: 1122 TSNILLIILAVTVALGAIIGICAVCVFWSRYKTAQRNASNFSHS 1165
>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
protein 5, isoforma protein.
Length = 1544
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 508 SSSISILYTTVSVMV*ALDGSFSPCL*WSTLRTRKRPRSPNTHS 639
+S+I ++ V+V + A+ G + C+ WS +T +R S +HS
Sbjct: 1266 TSNILLIILAVTVALGAIIGICAVCVFWSRYKTAQRNASNFSHS 1309
>AF303262-1|AAG50220.1| 362|Caenorhabditis elegans gap junction
innexin protein.
Length = 362
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 71 GRWTSLIDSRCLTLNTHYIQINTS 142
G W +S CL NT+Y+ +N S
Sbjct: 60 GGWEEYAESYCLIENTYYVHMNNS 83
>AF067219-9|AAX88822.1| 266|Caenorhabditis elegans Innexin protein
17, isoform b protein.
Length = 266
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 71 GRWTSLIDSRCLTLNTHYIQINTS 142
G W +S CL NT+Y+ +N S
Sbjct: 60 GGWEEYAESYCLIENTYYVHMNNS 83
>AF067219-8|AAC17025.1| 362|Caenorhabditis elegans Innexin protein
17, isoform a protein.
Length = 362
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 71 GRWTSLIDSRCLTLNTHYIQINTS 142
G W +S CL NT+Y+ +N S
Sbjct: 60 GGWEEYAESYCLIENTYYVHMNNS 83
>AC006730-1|AAK72090.1| 324|Caenorhabditis elegans Serpentine
receptor, class i protein33 protein.
Length = 324
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 278 TQYERFIPSAYPYYVSSFSMMIGVFLFSF 192
T+ E+FI S YP Y+S F + ++ F
Sbjct: 156 TRREKFIESRYPKYLSEFKNLSNFAIYQF 184
>Z81521-2|CAB04224.1| 514|Caenorhabditis elegans Hypothetical
protein F32A11.2 protein.
Length = 514
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/101 (22%), Positives = 44/101 (43%)
Frame = -2
Query: 577 ERRNRPVPIPLQTLLYTELKLKS*RMANGSLSKQTMCS*SLCESTLLYAQLYKRNPMASM 398
+RR + PIP + L+ TEL+ ++ +M S L + ++ N
Sbjct: 282 KRRRKSAPIP-EPLVRTELE----HDPTDIITMSSMTSEKLLDFLFQNEPIFCSNISKYR 336
Query: 397 RLSSKFQMSGVFISSKWITTGSGIQDFITQHRCQSAHYNTH 275
++ F M F++ W T S +D++ Q +S +N +
Sbjct: 337 YVAETFSMCD-FLTGDWTTRKSLPEDYVAQMATRSVMWNNY 376
>Z68342-3|CAA92773.1| 751|Caenorhabditis elegans Hypothetical
protein F38E11.4 protein.
Length = 751
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 397 RLSSKFQMSGVFISSKWITTGSGIQDFITQH--RCQSAHYNTHNMSASYRAPTHTTS 233
RLS++ +MSG+ +S K+ T SG +I H C+ + NT PT S
Sbjct: 512 RLSTECRMSGISVSLKFATPTSG-TIYIKDHFSSCRQSFSNTSFAELHIPFPTEDDS 567
>AL117203-15|CAD57713.2| 670|Caenorhabditis elegans Hypothetical
protein Y48C3A.5b protein.
Length = 670
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 272 IVCVVVGGLTPVLSDKVLYTRPC---RNPL*TDKHP 370
+VC VVGGL V+S LY R C RNP+ T +P
Sbjct: 59 LVCGVVGGLIVVISVVYLY-RYCLKRRNPVTTTVNP 93
>AL117203-14|CAD57712.2| 587|Caenorhabditis elegans Hypothetical
protein Y48C3A.5a protein.
Length = 587
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 272 IVCVVVGGLTPVLSDKVLYTRPC---RNPL*TDKHP 370
+VC VVGGL V+S LY R C RNP+ T +P
Sbjct: 59 LVCGVVGGLIVVISVVYLY-RYCLKRRNPVTTTVNP 93
>AF076840-1|AAC95522.1| 514|Caenorhabditis elegans Rad17-like
protein protein.
Length = 514
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/101 (22%), Positives = 44/101 (43%)
Frame = -2
Query: 577 ERRNRPVPIPLQTLLYTELKLKS*RMANGSLSKQTMCS*SLCESTLLYAQLYKRNPMASM 398
+RR + PIP + L+ TEL+ ++ +M S L + ++ N
Sbjct: 282 KRRRKSAPIP-EPLVRTELE----HDPTDIITMSSMTSEKLLDFLFQNEPIFCSNISKYR 336
Query: 397 RLSSKFQMSGVFISSKWITTGSGIQDFITQHRCQSAHYNTH 275
++ F M F++ W T S +D++ Q +S +N +
Sbjct: 337 YVAETFSMCD-FLTGDWTTRKSLPEDYVAQMATRSVMWNNY 376
>AF067937-7|AAN84819.1| 392|Caenorhabditis elegans Hypothetical
protein F22F7.1b protein.
Length = 392
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -1
Query: 347 DYDRVGYTRLYHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVFL 201
D + ++ Y +T VRP+ Y R Y Y + + M + +F+
Sbjct: 246 DKSIINRSQYYDATSRQVRPIHMETYIRLSSQFYGYLIGLWIMFLSIFV 294
>AF067937-6|AAF99915.1| 426|Caenorhabditis elegans Hypothetical
protein F22F7.1a protein.
Length = 426
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -1
Query: 347 DYDRVGYTRLYHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVFL 201
D + ++ Y +T VRP+ Y R Y Y + + M + +F+
Sbjct: 246 DKSIINRSQYYDATSRQVRPIHMETYIRLSSQFYGYLIGLWIMFLSIFV 294
>AC006633-6|AAK68378.4| 578|Caenorhabditis elegans Hypothetical
protein F35B3.7 protein.
Length = 578
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -1
Query: 599 NVDHHRQGEKEPSSAYTITDTVVYRIEIEELKNGKWQPFEANDVQLEFVRIDPFIRTT 426
N+ + S+A T D R ++G WQPF +N + ID F+ +T
Sbjct: 253 NIPRPVHSTQSASNALTTMDHRTLRDVSSRRRSGTWQPFSSNTYNADRPPID-FVTST 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,574
Number of Sequences: 27780
Number of extensions: 355507
Number of successful extensions: 951
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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