Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_K22
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   6.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   6.3  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.3  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.3  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   8.3  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 60  CKTHLHILKTSHIHLLTNVIVIILYL 137
           CK+ L ++++ H  LLTN ++++  L
Sbjct: 342 CKSLLQLIRSDHTALLTNSLLVMTTL 367


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 240  HR*QISFPKEKNNFITIDIQSIEPHIYIYIL 332
            +R  I   +E  +F TIDIQS E  IY  +L
Sbjct: 1632 NRISIDAYEESYSFSTIDIQSFENSIYREVL 1662


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 417 LSVYWPDDSVRARLLPTSLN 358
           L++YWPD+S  A   P   N
Sbjct: 282 LALYWPDNSFNANKYPQIFN 301


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 304 IDCMS-IVIKLFFSFGKLIC--YLCYINCCAAYLRYVVAWKMSVYTCM 170
           + C + I++K+      ++C  Y+  I  C  Y+R++    + +  CM
Sbjct: 22  VSCFNPILLKIILFLNTIVCIFYVYKIALCNEYIRFLAKCFLYILRCM 69


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 208 TLNKQHNN*CNIDNRSVFQKRKIILLQ*TYNQLSHI--YIFIYY 333
           T N   NN  N +N +   KRK  L+     QLSH   Y+F+ Y
Sbjct: 725 TENDDDNNINNNNNDNNTPKRKNFLMDHIQRQLSHDLWYLFLGY 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,139
Number of Sequences: 5004
Number of extensions: 41405
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)