Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_K18
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 334 2e-92
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 53 2e-07
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 52 4e-07
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 50 2e-06
U23513-1|ABD94110.1| 294|Caenorhabditis elegans Hypothetical pr... 29 4.0
AC024761-15|AAM97968.1| 231|Caenorhabditis elegans Hypothetical... 28 5.3
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z50797-5|CAA90675.1| 342|Caenorhabditis elegans Hypothetical pr... 27 9.3
AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical ... 27 9.3
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 334 bits (822), Expect = 2e-92
Identities = 162/189 (85%), Positives = 173/189 (91%)
Frame = -2
Query: 676 TDMGTMQXRITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 497
TDMG+MQ RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR IAEL IYP
Sbjct: 346 TDMGSMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELAIYP 405
Query: 496 AVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVAR 317
AVDPLDSTSRIMDPN++G HY++ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV+R
Sbjct: 406 AVDPLDSTSRIMDPNVVGQNHYDIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSR 465
Query: 316 ARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEV 137
ARKIQRFLSQPFQVAEVFTGH GK V LEETI+GF+ IL G+ DHLPEVAFYM G I++V
Sbjct: 466 ARKIQRFLSQPFQVAEVFTGHQGKFVSLEETIRGFTMILKGELDHLPEVAFYMQGGIDDV 525
Query: 136 VAKAETLAK 110
KAE LAK
Sbjct: 526 FKKAEELAK 534
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 52.8 bits (121), Expect = 2e-07
Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Frame = -2
Query: 676 TDMGTMQXRITTTK--KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 503
TD+ T+ R K +GSIT + + +P +D+T P P T + + + + + I
Sbjct: 321 TDLATIYERAGRVKGREGSITQIPILTMPNNDITHPIPDLTGYITEGQIYIDKQLHKRLI 380
Query: 502 YPAVDPLDSTSRIM----DPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEED 335
YP +D L S SR+M + +H +++ + K +Q + A++G++ LS +D
Sbjct: 381 YPPIDVLPSLSRLMKSAVGEGMTREDHSDLSNQLYACYAMGKDVQAMKAVVGVEALSPDD 440
Query: 334 KLTVARARKIQR-FLSQ 287
L + K ++ F++Q
Sbjct: 441 LLYLEFLAKFEKNFIAQ 457
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 52.0 bits (119), Expect = 4e-07
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Frame = -2
Query: 676 TDMGTMQXRITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 503
TD+ T+ R + GSIT + + +P DD+T P P T + + R + I
Sbjct: 309 TDLATIYERAGRVEGRDGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLI 368
Query: 502 YPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEED 335
YP ++ L S SR+M I +H +V+ + K +Q + A++G + LS +D
Sbjct: 369 YPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSDD 428
Query: 334 KLTVARARKIQR-FLSQ 287
L + K ++ F++Q
Sbjct: 429 LLYLEFLTKFEKNFITQ 445
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 50.0 bits (114), Expect = 2e-06
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Frame = -2
Query: 637 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM- 461
++GS+T V A+ P D DP + T + L + +A+ +P+++ L S S M
Sbjct: 389 REGSVTIVGAVSPPGGDFADPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSEYMR 448
Query: 460 ------DPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR 299
+ N E ++ ++ILQ+ + L +I+ ++G L+E DK+T+ ++ +
Sbjct: 449 ALEEFYEKNY--PEFVSLRTKCKEILQEEEDLSEIVQLVGKASLAESDKVTL----EVAK 502
Query: 298 FLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYD 185
+ F +T + + P +T+ G K + G YD
Sbjct: 503 IIKDDFLQQNGYTKY-DRFCPFYKTV-GMLKNMIGFYD 538
>U23513-1|ABD94110.1| 294|Caenorhabditis elegans Hypothetical
protein D2021.4a protein.
Length = 294
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -2
Query: 472 SRIMDPNIIGAEHYN-VARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRF 296
++I D N+I + HYN V+ G + L D K ++ + + D E K+ +A + +F
Sbjct: 56 NKIKDENVIFSMHYNFVSAGDPRKLIDIK-IEKVGNVYTADVYHENKKIGLAHIKTDSKF 114
Query: 295 LSQ-PF 281
L + PF
Sbjct: 115 LRKIPF 120
>AC024761-15|AAM97968.1| 231|Caenorhabditis elegans Hypothetical
protein Y38C1AA.11 protein.
Length = 231
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -3
Query: 525 EPLLNWVSTQLWILLTQHPVSWTPI-LLELSTTM-LHVEFRK 406
+ L N++ Q W++L HP +TP+ EL+ + L EFRK
Sbjct: 20 QTLHNYIGEQ-WLMLFSHPADFTPVCTTELAELVKLAPEFRK 60
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = -2
Query: 646 TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSR 467
TTTK + T++ + T P P TT + TT +R IA V P+ +
Sbjct: 186 TTTKPPTTTTIATTRITTKTTTSPPPFTT--TVTTTTSAARTIATTTPIKTVPPVKVFGK 243
Query: 466 IMDP 455
+ P
Sbjct: 244 AIKP 247
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 410 ENSSGLQIPAGHYCYFG 360
ENS+G + AGH+C+ G
Sbjct: 424 ENSNGTECSAGHWCHIG 440
>Z50797-5|CAA90675.1| 342|Caenorhabditis elegans Hypothetical
protein T22H6.4 protein.
Length = 342
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 550 LDATTVLSRAIAELGIYPAVDPLDSTSRIMD 458
+D ++ A LGIYPA+DP+ + I D
Sbjct: 275 IDVGVAANKTAAFLGIYPALDPMIAIFLIKD 305
>AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical
protein T06A4.1b protein.
Length = 606
Score = 27.5 bits (58), Expect = 9.3
Identities = 23/102 (22%), Positives = 39/102 (38%)
Frame = -2
Query: 646 TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSR 467
TTT T+ P + T+P+P T A +TT + +E +P TS
Sbjct: 491 TTTTTEEPTTTTTTEEPTEAPTEPSPTTVEATEASTTPEASTSSETSTTENSEPNQKTST 550
Query: 466 IMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSE 341
+ P E + DY L ++ + D++S+
Sbjct: 551 PVAPEASTVEEETITPIKCVDYGDYCRLWGVLQLCYRDQVSK 592
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,105,139
Number of Sequences: 27780
Number of extensions: 355572
Number of successful extensions: 909
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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