Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_K17
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0880 + 29046842-29046990,29047467-29047701,29048132-290482...    72   5e-13
07_03_0455 + 18374327-18374533,18375136-18375482,18375959-183761...    62   3e-10
07_01_0442 - 3348638-3349126,3349978-3350322                           40   0.001
08_02_1053 - 23968372-23968442,23969245-23969294,23970396-239704...    32   0.37 
11_01_0535 + 4234282-4235082                                           31   0.65 
08_02_0923 - 22649420-22649605,22649694-22649774,22649867-226501...    28   6.0  

>04_04_0880 +
           29046842-29046990,29047467-29047701,29048132-29048227,
           29048887-29048958,29049091-29049195
          Length = 218

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 52/203 (25%), Positives = 98/203 (48%), Gaps = 23/203 (11%)
 Frame = -2

Query: 635 QCLRRLYETYYLQVFAKSSKMNISHYFAGIIHYFACIVV----CVGQAPLFCGSQ----- 483
           Q LRRLYET ++  ++ S++M+I  Y  G+ +Y A  +     C+ +A  +   Q     
Sbjct: 20  QVLRRLYETEHVFHYSPSARMHIVGYLTGLFYYVAAPLSLASSCIPEAAEYLQGQVAEFI 79

Query: 482 --NREKVTWIDTKTTILFVPC----------TLIFLWCWYEQYQTNIIFAYLRKDKKSNK 339
              R ++  +   ++ L  P            +IF+W    Q + + I   LR+ K S++
Sbjct: 80  VKGRARMPDLVIDSSSLLQPLLKLGWTQWIGAVIFIWGSLHQIRCHAILGTLREHKDSDE 139

Query: 338 IVTEDHRVPNGRMFKYVSSPHRMCEIIMYTVLVFLITTKTFVC--IYLWVLSNQIQTGIH 165
            V     +P G  F  VS PH + E+++Y  ++     +      ++++V++N     + 
Sbjct: 140 YV-----IPCGDWFNRVSCPHYLAELVIYFGMLVASGGEDIPVWFLFVFVITNLSFAAVE 194

Query: 164 AHEWYKKTFKNYPAKRTAVFPYV 96
            H+WY + F++YP  R A+ P+V
Sbjct: 195 THKWYLQKFEDYPRSRYAIIPFV 217


>07_03_0455 +
           18374327-18374533,18375136-18375482,18375959-18376193,
           18376629-18376724,18377392-18377463,18377596-18377700
          Length = 353

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 24/204 (11%)
 Frame = -2

Query: 635 QCLRRLYETYYLQVFAKSSKMNISHYFAGIIHYFA--------CIVVCV----GQAPLFC 492
           Q LRRLYET ++  ++ + +M+I  Y  G+ +Y A        CI        GQ P F 
Sbjct: 156 QVLRRLYETEHVFHYSPA-RMHIVGYLTGLFYYVAAPLSLASSCIPEAAEYFQGQVPEFV 214

Query: 491 GSQNREKVTWIDTKTTILFVPC----------TLIFLWCWYEQYQTNIIFAYLRKDKKSN 342
             + R ++  +   ++ L  P            +IF+W    Q + + I   LR+ K  +
Sbjct: 215 -VKGRARMPDLVIDSSSLLQPLLKLGWTQWIGAVIFIWGSLHQIRCHAILGSLREHKDYD 273

Query: 341 KIVTEDHRVPNGRMFKYVSSPHRMCEIIMYTVLVFLITTKTFVC--IYLWVLSNQIQTGI 168
           + V     +P G  F  VS PH + E+++Y  ++     +      ++++V++N     +
Sbjct: 274 EYV-----IPCGDCFNRVSCPHYLAELVIYFGMLVASGAEDIPVWFLFIFVITNLSFAAV 328

Query: 167 HAHEWYKKTFKNYPAKRTAVFPYV 96
             + WY + F++YP  R A+ P+V
Sbjct: 329 ETYNWYLQKFEDYPRSRYAIIPFV 352


>07_01_0442 - 3348638-3349126,3349978-3350322
          Length = 277

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = -2

Query: 323 HRVPNGRMFKYVSSPHRMCEIIMYTVLVFLITTKTFVCIYLWVLSNQIQTGIHAHEWYKK 144
           +R+P G +F   + PH + EI+ +     +  T   + +    ++           WY+ 
Sbjct: 201 YRIPTGGLFGLAACPHYLFEIVGFFGFAMIAQTAHALAVASGTVAYLAGRSCATRRWYES 260

Query: 143 TFKNYPAKRTAVFPYVL 93
            F+++P    A+ PY+L
Sbjct: 261 KFEDFPDSIKALVPYIL 277


>08_02_1053 -
           23968372-23968442,23969245-23969294,23970396-23970457,
           23970527-23970709,23970737-23970901,23972235-23972408
          Length = 234

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 419 IFLWCWYEQYQTNIIFAYLRKDKKSNKIVTEDHRVPNGR--MFKYVSSPHRM 270
           +F+ CW E        AYL +  KSNK     H++   +  +F Y +SP  M
Sbjct: 146 LFMHCWNELKNQPKWHAYLEQLDKSNKRKNVSHKISYAKASLFTYCASPRNM 197


>11_01_0535 + 4234282-4235082
          Length = 266

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = -2

Query: 323 HRVPNGRMFKYVSSPHRMCEIIMYTVLVFLITTKTFVCIYLWVLSNQIQTGIHAHEWYKK 144
           +++P   +F  V+ P+   E + +     +  T      +L+   N          WY  
Sbjct: 189 YQIPKDGLFDLVACPNYFGETVEWLGYALVAWTPAAWAFFLYTCVNLGPRARDQRLWYIS 248

Query: 143 TFKN-YPAKRTAVFPYV 96
            F + YPA R A  PY+
Sbjct: 249 KFGDKYPASRKAFIPYI 265


>08_02_0923 -
           22649420-22649605,22649694-22649774,22649867-22650146,
           22650412-22650716,22650809-22650961,22651425-22652261
          Length = 613

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 121 RELQSSLMYCKVNTKLQTCIFS 56
           R+L+ +L Y  +N+KL +C+FS
Sbjct: 125 RDLELTLRYTYINSKLNSCLFS 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,297,641
Number of Sequences: 37544
Number of extensions: 354184
Number of successful extensions: 681
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)