Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_K13
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493...    29   3.5  
03_05_1157 + 30816143-30816359,30817005-30817120                       28   6.1  
11_01_0475 - 3669734-3671452                                           28   8.0  
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910...    28   8.0  
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632...    28   8.0  

>04_03_0520 -
           16748646-16748741,16748821-16748895,16749260-16749362,
           16749635-16749783,16750986-16751110,16751320-16751389
          Length = 205

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 521 QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 423
           Q K+   + LP  + SL +   G TMK+ART T
Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202


>03_05_1157 + 30816143-30816359,30817005-30817120
          Length = 110

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 445 IVIPHTLINKLWFHFGSDSIVLIFVW 522
           ++IPH  +NK  FH  S +++LIF+W
Sbjct: 85  LIIPHDTLNKGKFHKRS-NLLLIFLW 109


>11_01_0475 - 3669734-3671452
          Length = 572

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 566 SSGSTHFRFAGPLCEEEELFDAID 637
           SSG+ HFR +G +   +E+F A++
Sbjct: 486 SSGAKHFRVSGSVASPDEIFAALE 509


>03_03_0226 +
           15590276-15590469,15590515-15590539,15590865-15591014,
           15591166-15591594
          Length = 265

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
 Frame = -1

Query: 614 LPHKVDQRNENA*IHWKQVPLVLQKTNL*RYQTKMRTMLSLPKWNQSLLMRVCGMTMKMA 435
           LP K+D  + +    W     V+++  L   +   R+ LS  KW+      V      ++
Sbjct: 103 LPTKIDDLSHSTGHGWTTREKVIKRLLLMVLEPVKRSDLSRLKWSSYDYCLVLDQRCSVS 162

Query: 434 RTMTKLITERTILIWK*LVLMA-LQLEMLIFLEVKVEQSAMHKVN 303
            T + L    T   W     +A LQL +L+ +E ++ Q    + N
Sbjct: 163 PTTSTLSGRVTTTAWSSTSDIAFLQLPLLLVVEFRLHQVLDQRCN 207


>01_07_0187 +
           41862342-41862622,41862730-41862912,41863236-41863299,
           41863547-41863756,41863850-41864035,41864180-41864478,
           41864584-41864731,41864798-41864863,41864945-41865217,
           41865523-41865741,41865864-41866013
          Length = 692

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 433 RAIFIVIPHTLINKLWFHFGSDSIVLIFVWY 525
           R   + +P TL+++LW HF     +  +V Y
Sbjct: 142 RLAILQLPFTLLSRLWVHFACLCFISFYVVY 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,605,069
Number of Sequences: 37544
Number of extensions: 305322
Number of successful extensions: 786
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)