Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_K13
         (689 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069561-1|AAL39706.1|  764|Drosophila melanogaster LD29352p pro...    29   6.0  
AE014298-2121|AAN09659.2|  731|Drosophila melanogaster CG5877-PB...    29   6.0  
AE014298-2120|AAF48437.1|  984|Drosophila melanogaster CG5877-PA...    29   6.0  

>AY069561-1|AAL39706.1|  764|Drosophila melanogaster LD29352p
           protein.
          Length = 764

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = -1

Query: 575 IHWKQVPLVLQKTNL*RYQTKMRTMLSLPK--WNQSLLMRVCGMTMKMARTMTKLITERT 402
           I+W+   + L KTN    ++K   ++++ +  W++SLLM    +      ++  L+TE+ 
Sbjct: 689 IYWRLYMIALSKTNASFRRSKEVLIMAMDECPWDKSLLMEGAKVLPVKLASLQDLMTEKE 748

Query: 401 ILIW 390
           I I+
Sbjct: 749 IRIF 752


>AE014298-2121|AAN09659.2|  731|Drosophila melanogaster CG5877-PB,
           isoform B protein.
          Length = 731

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = -1

Query: 575 IHWKQVPLVLQKTNL*RYQTKMRTMLSLPK--WNQSLLMRVCGMTMKMARTMTKLITERT 402
           I+W+   + L KTN    ++K   ++++ +  W++SLLM    +      ++  L+TE+ 
Sbjct: 656 IYWRLYMIALSKTNASFRRSKEVLIMAMDECPWDKSLLMEGAKVLPVKLASLQDLMTEKE 715

Query: 401 ILIW 390
           I I+
Sbjct: 716 IRIF 719


>AE014298-2120|AAF48437.1|  984|Drosophila melanogaster CG5877-PA,
            isoform A protein.
          Length = 984

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = -1

Query: 575  IHWKQVPLVLQKTNL*RYQTKMRTMLSLPK--WNQSLLMRVCGMTMKMARTMTKLITERT 402
            I+W+   + L KTN    ++K   ++++ +  W++SLLM    +      ++  L+TE+ 
Sbjct: 909  IYWRLYMIALSKTNASFRRSKEVLIMAMDECPWDKSLLMEGAKVLPVKLASLQDLMTEKE 968

Query: 401  ILIW 390
            I I+
Sbjct: 969  IRIF 972


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,460,628
Number of Sequences: 53049
Number of extensions: 511776
Number of successful extensions: 1306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)