Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_K11
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378... 105 1e-23
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161... 103 5e-23
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63... 102 9e-23
09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292 29 1.0
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788 27 4.0
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 27 4.0
05_07_0219 - 28474661-28475146,28475979-28476644 26 9.3
03_02_0347 - 7676510-7677832 26 9.3
03_01_0502 - 3779551-3779562,3779863-3780012,3780129-3780172,378... 26 9.3
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786... 26 9.3
>02_05_1204 +
34936696-34936698,34936809-34936944,34937794-34937895,
34938153-34938199
Length = 95
Score = 105 bits (251), Expect = 1e-23
Identities = 51/89 (57%), Positives = 61/89 (68%)
Frame = -2
Query: 299 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 120
M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 119 XXRMRHLKIVQEALP*WF*RRETNAATRR 33
RMR+L+ V + F R T AA R+
Sbjct: 61 TGRMRYLRHVPKRFKSNF-REGTEAAPRK 88
>08_01_0195 +
1612938-1613003,1613026-1613161,1614624-1614725,
1614833-1614876
Length = 115
Score = 103 bits (246), Expect = 5e-23
Identities = 49/95 (51%), Positives = 62/95 (65%)
Frame = -2
Query: 317 IVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAX 138
++ S + KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 16 LLHSSNVGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAI 75
Query: 137 XXXXXXXXRMRHLKIVQEALP*WF*RRETNAATRR 33
RMR+++ V F R T A R+
Sbjct: 76 RRKTTGTGRMRYMRHVPRRFKSNF-REGTEATPRK 109
>02_01_0089 +
633642-633644,633728-633863,635356-635457,635565-635608
Length = 94
Score = 102 bits (244), Expect = 9e-23
Identities = 49/89 (55%), Positives = 59/89 (66%)
Frame = -2
Query: 299 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 120
M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 119 XXRMRHLKIVQEALP*WF*RRETNAATRR 33
RMR+++ V F R T A R+
Sbjct: 61 TGRMRYMRHVPRRFKSNF-REGTEATPRK 88
>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
Length = 222
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 335 PADVFRIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKS 204
PA F + + T +FG K HT CR CG +S++ +S
Sbjct: 10 PASKFTLAAGAGESLTTYTFGTHTAK-HTFCRVCGITSFYTPRS 52
>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
Length = 326
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 186 ISCSKITILPLVSEG*AQEDYWNW--PHASFEDC 91
I+ +T + +S + +D W W PH +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = -2
Query: 275 GKRRNKTHTLCRRCGRSSYHIQKSK----CAQCGYPAAK 171
G+ + K T CR CG + K CA+CG+P K
Sbjct: 9 GEHKGKEKT-CRVCGEEVAAREDGKPFVACAECGFPVCK 46
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 311 KSDKMT-KGTSSFGKRRNKTHTLCRRCGR 228
KSD+ + G F + NK+ CRRCG+
Sbjct: 322 KSDEASGNGEKKFRGKFNKSKIECRRCGK 350
>03_02_0347 - 7676510-7677832
Length = 440
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 164 IVILLQDIHIGRILIFECDMTIYHIFCIT 250
++ LL+ + IGR+ +++ D + H F T
Sbjct: 53 VLPLLEGLGIGRVRLYDADPAVLHAFAKT 81
>03_01_0502 -
3779551-3779562,3779863-3780012,3780129-3780172,
3780256-3780319,3780422-3780655,3780765-3780908,
3781027-3781221,3781447-3781522,3781689-3781788,
3781955-3781988,3782076-3782160,3782226-3782290,
3782380-3782478,3782810-3782875,3785485-3785721
Length = 534
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 8 ILIHDEATAFLWRRWFPFFKT 70
IL + + W +WFPF KT
Sbjct: 216 ILGYSSGSTNNWHKWFPFLKT 236
>01_06_0358 - 28677781-28677901,28678327-28678430,28678542-28678625,
28679221-28679265,28679523-28679594,28679721-28679759,
28679966-28680061,28680492-28680566,28681717-28681764,
28681888-28681971,28682141-28682341,28682394-28682561,
28683232-28683372,28683470-28683517,28683845-28684087,
28684184-28684297,28685134-28685163,28685361-28685951,
28686033-28686620,28686744-28686863,28687764-28687938,
28688397-28688562,28688653-28688755,28689227-28689319,
28690759-28690918,28691754-28691872
Length = 1275
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 56 PFFKTITEAPPXQSSNDACGQFQ*SSCA*PSLTSGRIVILLQDIH 190
P F + + PP + + Q S+ P+LT ++I + DI+
Sbjct: 1067 PIFPRLVDLPPDRFQDALARILQGSAHTGPALTPAEVLIAIHDIN 1111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,366,000
Number of Sequences: 37544
Number of extensions: 168153
Number of successful extensions: 369
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -