Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_K11
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...    93   5e-20
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...    90   5e-19
L23646-5|ABD94102.1|  145|Caenorhabditis elegans Hypothetical pr...    31   0.17 
L23646-4|AAA28039.1|  152|Caenorhabditis elegans Hypothetical pr...    31   0.17 
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    31   0.23 
U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical pr...    31   0.30 
Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical pr...    28   1.6  
AL117207-15|CAB60407.2|  476|Caenorhabditis elegans Hypothetical...    27   2.8  
AB049441-1|BAB15803.1|  450|Caenorhabditis elegans CeCHK2 protein.     27   2.8  
AB041996-1|BAB20578.1|  476|Caenorhabditis elegans Ce-CDS-1 prot...    27   2.8  
AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine re...    27   3.7  

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 39/70 (55%), Positives = 50/70 (71%)
 Frame = -2

Query: 299 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 120
           MTKGT +FGK+  K+HTLC+RCG+SS+HIQK +CA CGYP AK R+Y+W  K+       
Sbjct: 1   MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYPDAKKRTYNWGAKSIRRRTTG 60

Query: 119 XXRMRHLKIV 90
             R RHL+ V
Sbjct: 61  TGRTRHLRDV 70


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
           protein C54C6.1 protein.
          Length = 91

 Score = 89.8 bits (213), Expect = 5e-19
 Identities = 38/70 (54%), Positives = 49/70 (70%)
 Frame = -2

Query: 299 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 120
           MTKGT +FGK+  K+HTLC+RCG+SS+HIQK +CA CGY  AK R+Y+W  K+       
Sbjct: 1   MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTG 60

Query: 119 XXRMRHLKIV 90
             R RHL+ V
Sbjct: 61  TGRTRHLRDV 70


>L23646-5|ABD94102.1|  145|Caenorhabditis elegans Hypothetical
           protein F44E2.6b protein.
          Length = 145

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 347 K*IRPADVFRIVK-SDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPA 177
           K + P +V+R+ + S   T  T  F     K   +C  CG   ++      A CG+PA
Sbjct: 24  KSVLPNEVYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 81


>L23646-4|AAA28039.1|  152|Caenorhabditis elegans Hypothetical
           protein F44E2.6 protein.
          Length = 152

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 347 K*IRPADVFRIVK-SDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPA 177
           K + P +V+R+ + S   T  T  F     K   +C  CG   ++      A CG+PA
Sbjct: 31  KSVLPNEVYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 88


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 281 SFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAA 174
           ++ K    TH  C +CG+ + +    KC  CG P A
Sbjct: 93  TYNKNNFSTHHFCNKCGKVAQN--SKKCKHCGGPVA 126


>U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical
           protein T25D1.2 protein.
          Length = 438

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 281 SFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAA 174
           ++ K    TH  C +CG+ + +    KC  CG P A
Sbjct: 165 TYNKNNFSTHHFCNKCGKVAQN--SKKCKYCGGPVA 198


>Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical
           protein C17H1.9 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 268 AEIRPIRYAEDVVDRH---ITFKNQNAPNVDILQQNYDP 161
           A+++ I+Y  D +++H   + F+NQ   +   L+ N DP
Sbjct: 230 ADLKKIKYTSDEIEKHKSKLEFRNQQLESSRTLEINADP 268


>AL117207-15|CAB60407.2|  476|Caenorhabditis elegans Hypothetical
           protein Y60A3A.12 protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 341 IRPADVFRIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYH 216
           I+P ++    K+++     + FG  +N  + +  RCG  SY+
Sbjct: 302 IKPENILCSDKAERCILKLTDFGMAKNSVNRMKTRCGTPSYN 343


>AB049441-1|BAB15803.1|  450|Caenorhabditis elegans CeCHK2 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 341 IRPADVFRIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYH 216
           I+P ++    K+++     + FG  +N  + +  RCG  SY+
Sbjct: 276 IKPENILCSDKAERCILKLTDFGMAKNSVNRMKTRCGTPSYN 317


>AB041996-1|BAB20578.1|  476|Caenorhabditis elegans Ce-CDS-1
           protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 341 IRPADVFRIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYH 216
           I+P ++    K+++     + FG  +N  + +  RCG  SY+
Sbjct: 302 IKPENILCSDKAERCILKLTDFGMAKNSVNRMKTRCGTPSYN 343


>AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein68 protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +2

Query: 188 HIGRILIFECDMTIYHIFCITYGSYFGAYRSLRYPS 295
           H G +++F  +++++  F I+   +F  +  L+Y S
Sbjct: 77  HCGFVILFCYELSVFTHFAISINRFFAVWMPLKYES 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,788,179
Number of Sequences: 27780
Number of extensions: 141757
Number of successful extensions: 358
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)