Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_K04
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...   141   5e-34
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...   138   3e-33
Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical pr...    31   1.1  
X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.       31   1.1  
X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.       31   1.1  
AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical ...    29   3.5  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score =  141 bits (341), Expect = 5e-34
 Identities = 72/137 (52%), Positives = 92/137 (67%)
 Frame = -1

Query: 412 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 233
           KAL A++KVVKG+     R++R SVHFRRP T +  R  ++PRKS PK ++MD + II+ 
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70

Query: 232 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKXYDINVAKVNTRIRPDGXXXXXXX 53
           PLT+E+AMKKIE++NTLVFIV   ANK+ IK AV K Y++   KVNT I P         
Sbjct: 71  PLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVR 130

Query: 52  XXXXXXALDVANKIGII 2
                 ALDVANKIG+I
Sbjct: 131 LTADYDALDVANKIGVI 147


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score =  138 bits (335), Expect = 3e-33
 Identities = 71/139 (51%), Positives = 90/139 (64%)
 Frame = -1

Query: 418 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 239
           V KA++A++ VVKG      + +R SVHFRRPKT    R P+Y RKS P R+++D++ +I
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67

Query: 238 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKXYDINVAKVNTRIRPDGXXXXX 59
           K P T+E++MKKIED+NTLVFIV   ANKHHIK AV   Y++   KVNT I P       
Sbjct: 68  KAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAY 127

Query: 58  XXXXXXXXALDVANKIGII 2
                   ALDVANKIG I
Sbjct: 128 VRLASDYDALDVANKIGFI 146


>Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical
           protein F17E5.1b protein.
          Length = 620

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 388 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 212
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490

Query: 211 MKKIEDNNTLVFIVH 167
           M  I++N  L +  H
Sbjct: 491 MADIQNNEYLEYGTH 505


>Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical
           protein F17E5.1a protein.
          Length = 961

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 388 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 212
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831

Query: 211 MKKIEDNNTLVFIVH 167
           M  I++N  L +  H
Sbjct: 832 MADIQNNEYLEYGTH 846


>X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.
          Length = 620

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 388 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 212
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490

Query: 211 MKKIEDNNTLVFIVH 167
           M  I++N  L +  H
Sbjct: 491 MADIQNNEYLEYGTH 505


>X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.
          Length = 961

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 388 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 212
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831

Query: 211 MKKIEDNNTLVFIVH 167
           M  I++N  L +  H
Sbjct: 832 MADIQNNEYLEYGTH 846


>AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical
           protein Y48G8AR.3 protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 340 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 209
           + FRR  +    RH    R+++P ++      I KFP  SE A+
Sbjct: 1   MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 359  YSLPMFTFYNLPLSLKCFSNRFHYFF 436
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
           protein F16B12.6 protein.
          Length = 1392

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -1

Query: 334 FRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 155
           F  P   E  RHP   R+  P+R +      +K  LT  A+  +       V     +AN
Sbjct: 190 FAHPPDLE--RHPLSKRRGRPRRPQEQLETNVKLKLTRPASKAQRAPPTEPVAARTATAN 247

Query: 154 KHHIK 140
           + HIK
Sbjct: 248 QRHIK 252


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 421 PVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 284
           P  K LK   K+ K +H K ++K+    +  + P    PP HP Y R
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,912,903
Number of Sequences: 27780
Number of extensions: 230316
Number of successful extensions: 840
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)