Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J24
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    32   0.040
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.37 
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.0  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   4.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   7.9  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   7.9  

>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 32.3 bits (70), Expect = 0.040
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = -3

Query: 348 VVVCVLLSLLKYSK-VTVFFVVDSFPYKAVWTRSL*TIKPIIYGIGYLSLCSYVLDLFIA 172
           +VV V +  ++  + + +F+ ++      VW        P ++G   L    Y+    + 
Sbjct: 166 LVVRVFVKYVELMRSLQIFYTLEPAGSHGVWGLDDFHFLPFLFGAAQLVNHKYLRPKHVR 225

Query: 171 VMNVVFSCICDLMNVVYLNFVYYLNRYILTFFSLNFRSPI 52
              ++  C  D M   YL +VY+LN+ +    SL F SP+
Sbjct: 226 DPEILEMCRADYM---YLGYVYFLNK-LKPSVSLRFHSPM 261


>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -2

Query: 442 LKMVFISLFIFGILIHSIILLLPFILVNM*LCSSLCFT*FVEVFKSDC 299
           L+++ I + IFG+ ++ II L+P +L+    C  +    F+  F +DC
Sbjct: 16  LELLSIRINIFGLQLNIIINLIPLVLLFAFFCPCIY---FLHTFLADC 60


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 348 HNYIFTRIKGNNNIIECINIPKINKDIKTIFKY 446
           +NY+FT  + NN+I   I IP+ ++ I    K+
Sbjct: 146 NNYMFTTSRRNNSISGSITIPESDQQINLQNKF 178


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 248 SDLVQTALYGKESTTKKTVTFEYFNKLSKTQT 343
           +D +  A YGK   TKK + F+    L KT++
Sbjct: 53  TDSLYIAKYGKLKKTKKFIAFDLDGTLIKTKS 84


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 378 NNNIIECINIPKINKDIKTIFKYTGEVH 461
           N +++ C ++ K+N+   +IF+ T EVH
Sbjct: 483 NFSLVLCTHVAKVNEKTNSIFR-TYEVH 509


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 469 RLLCTSPVYLKMVFISLFIFGILIHSIILLLPFILVN 359
           +LLCT P+ + +   + F +G++   +  L P  + N
Sbjct: 307 KLLCTEPIIMALGLYNGFAYGLIFLYLDGLFPVFVDN 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,301
Number of Sequences: 5004
Number of extensions: 32267
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)