Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_J24
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical pr... 32 0.25
AF098504-5|AAC67410.3| 322|Caenorhabditis elegans Serpentine re... 31 0.33
AF098504-6|ABO52818.1| 300|Caenorhabditis elegans Serpentine re... 29 1.3
Z81521-5|CAE17802.1| 657|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z29117-13|CAA82377.2| 435|Caenorhabditis elegans Hypothetical p... 28 3.1
AC024878-2|AAK85512.1| 345|Caenorhabditis elegans Hypothetical ... 28 3.1
U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical pr... 27 5.4
AF016429-4|AAB65363.1| 881|Caenorhabditis elegans Patched relat... 27 7.1
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81131-5|CAB03422.2| 608|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p... 27 9.4
AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin d... 27 9.4
AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin d... 27 9.4
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ... 27 9.4
AF016450-9|AAB65987.3| 295|Caenorhabditis elegans Serpentine re... 27 9.4
AB088398-1|BAC76781.1| 715|Caenorhabditis elegans chondroitin s... 27 9.4
AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin s... 27 9.4
>Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical
protein H12I19.2 protein.
Length = 324
Score = 31.9 bits (69), Expect = 0.25
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = -3
Query: 228 IYGIGYLSLCSYVLDLFIAVMNVVFSCICDLMNVVYLNFVYYLNRYILTFFSLNFRSPIG 49
+Y + S+ Y+L FIAV N V + LM+++Y+ F+Y + I + L F +G
Sbjct: 72 VYALPMCSIVIYILKTFIAVENPVIGDL--LMDIIYV-FLYIMYLIIQVYHLLIFLLAVG 128
>AF098504-5|AAC67410.3| 322|Caenorhabditis elegans Serpentine
receptor, class t protein62 protein.
Length = 322
Score = 31.5 bits (68), Expect = 0.33
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = -3
Query: 213 YLSLCSYVLDLFIAVMNVVFSCICDLMNVVYLNFVYYLNRYILTFFSLNF 64
YL +Y ++ I + V + C ++NV++ N+ + L +++ ++ +LNF
Sbjct: 214 YLISKNYNAEVKILIQATVITVYCTVLNVLWHNYSWMLPQHLWSYTALNF 263
>AF098504-6|ABO52818.1| 300|Caenorhabditis elegans Serpentine
receptor, class t protein61 protein.
Length = 300
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = -3
Query: 198 SYVLDLFIAVMNVVFSCICDLMNVVYLNFVYYLNRYILTFFSLNF 64
SY ++ + + V + C ++NV++ N+ + L + + ++ +LNF
Sbjct: 238 SYNAEIKVLIQATVITVYCTVLNVLWHNYSWMLPQNLWSYTALNF 282
>Z81521-5|CAE17802.1| 657|Caenorhabditis elegans Hypothetical
protein F32A11.7 protein.
Length = 657
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 475 ISRLLCTSPVYLKMVFISLFIFGILIHSIILLLPFIL 365
+S+ SPV L + +S ++G++I S LL+P IL
Sbjct: 495 VSQPAILSPVMLSSLILSPAVYGVMILSPWLLVPVIL 531
>Z29117-13|CAA82377.2| 435|Caenorhabditis elegans Hypothetical
protein C48B4.2 protein.
Length = 435
Score = 28.3 bits (60), Expect = 3.1
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Frame = -3
Query: 345 VVCVLLSLLKYSKVTVFFVVDSFPYKAVWTRS-L*TIKPIIYGIGYLS----LCSYVLDL 181
+ + LS+++ + +++VVDS + VW + T+ P+I +L L +Y L +
Sbjct: 123 IFLIFLSIVQLA-FYLYYVVDSS--EGVWLSGPIPTMSPLIVSQYHLPELWRLFTYCL-I 178
Query: 180 FIAVMNVVFSCICDLMNVVYLNFVYYLNRYILTFFSLNFRS 58
+ + +++F+ + L V L V+ YIL F + F S
Sbjct: 179 NVGIFHIIFNILIQLAIGVPLELVHRWRIYILYFMGVLFGS 219
>AC024878-2|AAK85512.1| 345|Caenorhabditis elegans Hypothetical
protein Y97E10AL.2 protein.
Length = 345
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -3
Query: 192 VLDLFIAVMNVVFSCICDLMN--VVYLNF-VYYLNRYILTFFSLNFRSPIGG*YNN 34
+L FI ++ + CI L+ V++L VY+L RY F LNFR YN+
Sbjct: 1 MLGYFIVLIQPLLLCITILVLSIVIFLPILVYFLPRYTQFIFFLNFRRLPNTDYND 56
>U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical
protein C50E3.7 protein.
Length = 323
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/36 (25%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = -3
Query: 177 IAVMNVVFSCICDLMNVVY--LNFVYYLNRYILTFF 76
+ V ++ + + +M++VY +NF+Y++++Y+ F+
Sbjct: 288 VFVQLLITAVLYGIMSIVYETINFIYWIDKYLCHFY 323
>AF016429-4|AAB65363.1| 881|Caenorhabditis elegans Patched related
family protein 16 protein.
Length = 881
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 421 LFIFGILIHSIILLLPFILVNM 356
LF+FG +SI L++PF+++ +
Sbjct: 234 LFLFGFPFNSITLVMPFLIIGV 255
>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical
protein F29C12.3 protein.
Length = 1631
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = -3
Query: 219 IGYLSLCSYVLDLFIAVMNVVFSCICDLMNVVYLNFVYYLNRYILTFFSLNFRSPIG 49
+ YL L + D + + + + C+ ++V Y N + L+F+S R G
Sbjct: 362 LDYLGLGTVANDNLVRIRDTIVDLCCEFVDVPYANKTFESWEEALSFYSEKCRKRFG 418
>Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical
protein T24D1.1b protein.
Length = 734
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 109 ILFKQIYFNIFFSEFQVSDW 50
IL QIYF I FSEF W
Sbjct: 597 ILNAQIYFPIVFSEFSHESW 616
>Z81131-5|CAB03422.2| 608|Caenorhabditis elegans Hypothetical
protein T24D1.1a protein.
Length = 608
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 109 ILFKQIYFNIFFSEFQVSDW 50
IL QIYF I FSEF W
Sbjct: 471 ILNAQIYFPIVFSEFSHESW 490
>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
protein F26E4.10 protein.
Length = 1086
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 261 KQPCTERNQQRKRQSLLN 314
KQ C RNQQRK + L N
Sbjct: 215 KQTCNRRNQQRKAKRLRN 232
>AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 734
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 109 ILFKQIYFNIFFSEFQVSDW 50
IL QIYF I FSEF W
Sbjct: 597 ILNAQIYFPIVFSEFSHESW 616
>AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 736
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 109 ILFKQIYFNIFFSEFQVSDW 50
IL QIYF I FSEF W
Sbjct: 599 ILNAQIYFPIVFSEFSHESW 618
>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
protein F29C12.3 protein.
Length = 1631
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = -3
Query: 219 IGYLSLCSYVLDLFIAVMNVVFSCICDLMNVVYLNFVYYLNRYILTFFSLNFRSPIG 49
+ YL L + D + + + + C+ ++V Y N + L+F+S R G
Sbjct: 362 LDYLGLGTVANDNLVRIRDTIVDLCCEFVDVPYANKTFESWEEALSFYSEKCRKRFG 418
>AF016450-9|AAB65987.3| 295|Caenorhabditis elegans Serpentine
receptor, class t protein69 protein.
Length = 295
Score = 26.6 bits (56), Expect = 9.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 225 YGIGYLSLCSYVLDLFIAVMNVVFSCICDLMNVVY--LNFVYYL 100
YGI +L+L + + +FI +M V + NV Y +N + +L
Sbjct: 4 YGIIFLALSAPTIPIFIVIMKAVLNKDKQSANVTYKLMNLINFL 47
>AB088398-1|BAC76781.1| 715|Caenorhabditis elegans chondroitin
synthase-S protein.
Length = 715
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 109 ILFKQIYFNIFFSEFQVSDW 50
IL QIYF I FSEF W
Sbjct: 578 ILNAQIYFPIVFSEFSHESW 597
>AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin
synthase protein.
Length = 726
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 109 ILFKQIYFNIFFSEFQVSDW 50
IL QIYF I FSEF W
Sbjct: 589 ILNAQIYFPIVFSEFSHESW 608
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,169,521
Number of Sequences: 27780
Number of extensions: 176658
Number of successful extensions: 592
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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