Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J22
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-6|AAC19249.1|  319|Caenorhabditis elegans Serpentine re...    28   4.9  
Z68006-3|CAA91997.2|  633|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF098995-12|AAC67485.1|  406|Caenorhabditis elegans Hypothetical...    27   8.5  

>AF068709-6|AAC19249.1|  319|Caenorhabditis elegans Serpentine
           receptor, class t protein27 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 162 YFISSLAV*YNMYIVVFAETRFFQARILLTYFNMISF 52
           Y + +L V Y MY V+F     F ++ L  +FN + F
Sbjct: 153 YGVLTLPVIYGMYFVIFTTPIAFSSKHLTWFFNPLIF 189


>Z68006-3|CAA91997.2|  633|Caenorhabditis elegans Hypothetical
           protein K09C8.4 protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 323 LDRLRPSPWTPSWVLSGVFFCHLHGQTWLYAETLIN 430
           LD+LR + W   W +    +  +HG+T +  + + N
Sbjct: 195 LDKLRKNGWASKWRVVANKYLRIHGKTAMSDQDIFN 230


>U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical
           protein F18A1.7 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 85  SCLKKSSFCKHNNIHIVLNSQTRY 156
           +CLKK  +C HN +    +S   Y
Sbjct: 92  TCLKKEQYCDHNKLFAKASSSVEY 115


>AF098995-12|AAC67485.1|  406|Caenorhabditis elegans Hypothetical
           protein F58E1.12 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
 Frame = -1

Query: 586 TYLIRLTIGNLN-ELTGW-LSIHD 521
           +Y IRLT+GNL+ E+ G+ L +HD
Sbjct: 175 SYCIRLTVGNLHTEIVGYTLKLHD 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,744,198
Number of Sequences: 27780
Number of extensions: 211545
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)