Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_J20
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 199 3e-52
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 184 1e-47
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 1.9
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 27 1.9
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 2.6
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.5
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 5.9
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.9
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 199 bits (486), Expect = 3e-52
Identities = 93/128 (72%), Positives = 108/128 (84%)
Frame = -3
Query: 691 IPKXSNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHP 512
IP ++ ESKVFY KMKGDYYRYLAE A GE R + S + Y+ A EI+ A++ PTHP
Sbjct: 111 IPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHP 170
Query: 511 IRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNL 332
IRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLRDNL
Sbjct: 171 IRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNL 230
Query: 331 TLWTSDTQ 308
TLWTSD +
Sbjct: 231 TLWTSDAE 238
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 184 bits (448), Expect = 1e-47
Identities = 86/128 (67%), Positives = 103/128 (80%)
Frame = -3
Query: 691 IPKXSNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHP 512
IP + ESKVFY KMKGDYYRYLAE GE + S +AY+ A +I+ A++ PT P
Sbjct: 110 IPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDP 169
Query: 511 IRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNL 332
+RLGLALNFSVFYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDNL
Sbjct: 170 MRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNL 229
Query: 331 TLWTSDTQ 308
TLWTSD +
Sbjct: 230 TLWTSDAE 237
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 27.5 bits (58), Expect = 1.9
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 19 SSGQLDXCNPVSIQKSKTVKDDTTFNF-XRNGKVR-CERLLTFLQATARVGFGDDTAPDD 192
SS Q+ N +S+ KS +KDD +F+F R V C+R + F + +A V + D
Sbjct: 257 SSLQIIDINTLSLVKSINLKDDESFSFISRLTSVHFCDRQI-FSKFSA-VNTASTSKTSD 314
Query: 193 VLECYSFS 216
+E SFS
Sbjct: 315 TIERASFS 322
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 155 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 283
L + SV+I +TFS V+R L +T + VCW C L+ A+
Sbjct: 43 LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -3
Query: 628 RYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 482
RY+ ++ E R ED+++A + ++ + A +QP H I L LA+N S
Sbjct: 1049 RYIVALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -3
Query: 571 QKAYQDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 398
Q+ D E + P H L F S Y ++ D QLA Q F ++
Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474
Query: 397 DTLNEDSYKDSTLIMQLLRDN 335
+ L +++ S ++Q ++DN
Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495
>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 7 KYLYSSG-QLDXCNPVSIQKSKTVKDDTTFNFXRNGKV 117
KYL G Q D K+K +K ++ FN+ RNG+V
Sbjct: 97 KYLNEGGKQGDVGITKPHTKTKKLKSNSIFNYVRNGEV 134
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 518 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 619
C L+F L + K+ L+ I+Y + GFS H C
Sbjct: 46 CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,958
Number of Sequences: 5004
Number of extensions: 51616
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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