Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_J18
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 142 3e-35
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 106 3e-24
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 38 0.002
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 28 1.1
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 27 2.5
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 27 3.3
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 4.4
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 26 4.4
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 4.4
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 26 4.4
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 7.7
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 25 7.7
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 25 7.7
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 142 bits (345), Expect = 3e-35
Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Frame = -2
Query: 676 HSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKI 497
H I+FIPPDGE ELM YR+ ++I++PFR++P+V ++ + K+ ++ +++++ P L +
Sbjct: 274 HRITFIPPDGEVELMSYRSHENINIPFRIVPIVEQLSKQKIIYRISIRADY-PHKLSSSL 332
Query: 496 EVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKK 317
+IP P N +GKA Y+ SEN I WKI R G E AE+EL T ++
Sbjct: 333 NFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETELIFYAEVELSNTTNQQI 392
Query: 316 WTRPPISMGFEV-PFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
W +PPIS+ F + F SG V+YL+V EP + S + IKWVRY R+G E
Sbjct: 393 WAKPPISLDFNILMFTSSGLHVQYLRVSEP--SNSKYKSIKWVRYSTRAGTCE 443
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 106 bits (255), Expect = 3e-24
Identities = 60/172 (34%), Positives = 96/172 (55%), Gaps = 4/172 (2%)
Frame = -2
Query: 673 SISFIPPDGEFELMRYRTTKDISLPFRVIPLVREV-GRTKMEVKVVLKSNFKPSLLGQKI 497
+ISFIPPDGEF+LM YR + ++ P + V +++E V K+ FK + +
Sbjct: 252 TISFIPPDGEFDLMSYRMSSNVR-PLIWVECESIVHSGSRIEFMVKAKAQFKKRCIANNV 310
Query: 496 EVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL--LETDTK 323
++ IP P + + G +Y + A+VW IK+ AG KE + AE+ L ++ +
Sbjct: 311 QIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFAGGKEFFMRAEMGLPSVKNEDI 370
Query: 322 KKWTRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSG 170
+ + P+ + F +P F SG +VRYLK+ EPKLNY + WVRY+ ++G
Sbjct: 371 QVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNY---HAMPWVRYVTQNG 419
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 37.5 bits (83), Expect = 0.002
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Frame = -2
Query: 670 ISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKME--VKVVLKSNFKPSLLGQKI 497
I FIPPDG+F L ++T D + + +P+V E + K++ +V +++ K S+ KI
Sbjct: 248 IEFIPPDGKFTLASFQT--DFATQ-KSLPVVVE-AKNKLDGRFEVRIRNTGKKSVENLKI 303
Query: 496 EVKIPTPLNTSGV-QLICLKGKAKYKASENAIV-WKIKRMA 380
+ IP L + V + + +KY E I+ W +K++A
Sbjct: 304 LITIPQALKSVTVTEGNYIFRASKYTHMEEGILEWSVKKLA 344
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 206 VMVRVIQLRFEHLQVANLESGG 271
+ +R I +RFEHL V+N+ GG
Sbjct: 150 INIRDIHIRFEHLPVSNVVPGG 171
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 391 KRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVPFAPSGFKVRY 248
K++ + TQ+ +ELL T T+++W P + + S F+VRY
Sbjct: 229 KKVVPFQSTQMLRIMELLGTPTEERW---PGLKNYPEYYQLSSFEVRY 273
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 520 PSLLGQKIEVKIPTPLNTSGVQLICLK 440
PS+L IE + T +G+Q+IC+K
Sbjct: 242 PSILSSSIETFLRTLKRETGLQVICIK 268
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 462 PLVFSGVGIFTSIFCPSREGLKLLF 536
P+V SG G+ ++CP++ G L+F
Sbjct: 162 PVVSSG-GVMADLWCPAQRGTALIF 185
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 627 IAQQKTYLCRSASSRSCGRWAAPRWKSRLC*RVTSSPPCS 508
+ +Q LC S S G + PR K+++C P CS
Sbjct: 290 VVEQLPSLCACHSIPSRGGFHCPRCKAKVCTLPIECPSCS 329
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 283 VPFAPSGFKVRYLKVFEPKLNYSDHDVIKW 194
VP+ + + YLK+F K N S D+ +W
Sbjct: 206 VPYFSTAWFQFYLKLFSQKDNVSSSDLTRW 235
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 28 TGIAITLNCICIGLFFLLYFSNIR 99
TG+A L + GLFF+ YF +++
Sbjct: 108 TGVAARLGYLSCGLFFVSYFFSLK 131
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 128 YSPSPRRSAPGLVESGASDVAHPLDDVMVRVIQLRFEHL 244
+ PSP+ V G+ ++ L+D+ ++ I FE L
Sbjct: 164 FPPSPKVDTSNTVSPGSKPISEDLEDLNLQSIVQTFEDL 202
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 389 LDLPHDSVLRGFILRFPLQANQLHPAGVQRSWN 487
L+ P +LR L PLQ N + P GV +N
Sbjct: 432 LETPEPGLLRS--LMTPLQGNMVAPTGVHSQFN 462
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 484 PTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT 326
P L+ + VQL+ L + Y ASEN + K +R+A + A+ +L + T
Sbjct: 229 PKKLSANDVQLLVLAIQKFYNASENTPLGK-ERLALLAAFSKGADFDLHKVAT 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,666
Number of Sequences: 5004
Number of extensions: 55894
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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