Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_J18
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 180 7e-46
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 110 1e-24
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 108 3e-24
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 52 6e-07
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 46 3e-05
01_06_0888 + 32738275-32739567 31 1.1
07_03_1124 + 24157441-24157483,24157989-24158020,24158135-241583... 28 6.0
06_01_0917 - 7077934-7080339 28 6.0
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293... 28 7.9
07_03_1145 + 24335746-24336299,24336967-24337105,24337634-243376... 28 7.9
06_03_1013 - 26896690-26896818,26897051-26897089,26897178-268973... 28 7.9
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 28 7.9
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 180 bits (439), Expect = 7e-46
Identities = 84/173 (48%), Positives = 119/173 (68%), Gaps = 2/173 (1%)
Frame = -2
Query: 673 SISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIE 494
++SF+PPDGEFELM+YR T+ ++LPFRV+P ++E+GRT+ME+ V +KS F + +
Sbjct: 267 TVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEINVKVKSVFGAKMFALGVV 326
Query: 493 VKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLET-DTKKK 317
VK+P P T+ GKAKY AS +++VWKI++ G E +SAE+EL+ T KK
Sbjct: 327 VKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKIRKFPGQTEATMSAEVELISTMGEKKS 386
Query: 316 WTRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
W RPPI M F+VP F SG +VR+LKV+E S ++ ++WVRYI R+G YE
Sbjct: 387 WNRPPIQMEFQVPMFTASGLRVRFLKVWEK----SGYNTVEWVRYITRAGSYE 435
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 110 bits (264), Expect = 1e-24
Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 3/174 (1%)
Frame = -2
Query: 673 SISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIE 494
+ISFIPPDG F+LM YR + + V V + R+++++ V +S FK +E
Sbjct: 231 TISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVEKHSRSRIQITVKTRSQFKERSTATNVE 290
Query: 493 VKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL--LETDTKK 320
+++P P +++ + G A Y +A+VWKIK G KE AE L + ++
Sbjct: 291 IEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYMCRAEFSLPSITSEDGM 350
Query: 319 KWTRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
+ PI + FE+P F SG +VRYLK+ E S + + WVRYI +G YE
Sbjct: 351 PEKKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYE 400
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 108 bits (260), Expect = 3e-24
Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 3/174 (1%)
Frame = -2
Query: 673 SISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIE 494
+ISFIPPDG F+LM YR + + V + + R+++E+ V +S FK +E
Sbjct: 256 TISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIEKHSRSRIELMVKARSQFKERSTATNVE 315
Query: 493 VKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL--LETDTKK 320
+++P P + + + G A Y +A+VWK+K G K+ AE L + +
Sbjct: 316 IEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMCRAEFSLPSITAEEAA 375
Query: 319 KWTRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
+ PI + FE+P F SG +VRYLK+ E S + + WVRYI +G YE
Sbjct: 376 PEKKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYE 425
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 51.6 bits (118), Expect = 6e-07
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Frame = -2
Query: 670 ISFIPPDGEFELMRYRTTKDISLPFRVIP-LVREVGRTKMEVKVVLKSNFKPSLLGQKIE 494
+SF+PPDG+FELM YR K + P V P L + G ++ V V +K++ P I
Sbjct: 256 LSFVPPDGQFELMSYRVKKLKTTPIYVKPQLTSDSGNCRVNVMVGIKND--PGKTIDSIT 313
Query: 493 VKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKW 314
V+ P + L G A + W I ++ K LS + L E T
Sbjct: 314 VQFRLPPLIASADLTANYGTVDILADQTCF-WTIGQIPKDKAPSLSGNLRLEEGLTHLH- 371
Query: 313 TRPPISMGFEV-PFAPSGFKVRYLKV 239
T P + F++ A SG ++ L+V
Sbjct: 372 TFPTFEVKFKIMGVALSGLQIDKLEV 397
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = -2
Query: 673 SISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKM 554
++ IPPDGEF +M YR T++ PFRV L+ E G +++
Sbjct: 275 TLHLIPPDGEFAVMNYRITQEFKPPFRVTALIEEAGPSRI 314
>01_06_0888 + 32738275-32739567
Length = 430
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 404 DSVLRGFILRFPLQANQLHPAGVQRSWNLHFDLL 505
D+V+R R P N++H AGV R W H + L
Sbjct: 12 DAVVREIANRLPCVYNRVHLAGVCRPWREHLERL 45
>07_03_1124 +
24157441-24157483,24157989-24158020,24158135-24158353,
24158553-24158634,24158726-24158898
Length = 182
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 188 LHRTLRTLRDQVLNDAATVSTNWL 117
LHR RDQ LNDA + WL
Sbjct: 110 LHRGGHLCRDQSLNDAEAIEAGWL 133
>06_01_0917 - 7077934-7080339
Length = 801
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 374 HARHALDLPHDSVLRGFILRFPLQANQL 457
H LP D++LRG + RFP +A L
Sbjct: 223 HPEEVAGLPVDAILRGSVRRFPDEAGAL 250
>08_02_1047 -
23927822-23928112,23928736-23928981,23929119-23929395,
23929522-23929799,23931147-23931572
Length = 505
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 464 AGVQR--SWNLHFDLLSEQGGLEVTLQHNLDFHLG 562
A +QR WNL F SEQG + L H +D LG
Sbjct: 214 AAMQRVTQWNLDFTEHSEQGDRYMELAHRVDEALG 248
>07_03_1145 +
24335746-24336299,24336967-24337105,24337634-24337695,
24338140-24338278,24338692-24338829
Length = 343
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = +2
Query: 461 PAGVQRSWNLHFDLLSEQGGLEVTLQHNLDF---HLGAAHLPHERDDAERQRYVFCCAI 628
P G R W + D GG+E+T + L+ H+ A R E + Y C +
Sbjct: 93 PGGAGRRWFPYLDAFRAAGGVELTSREVLEVLEPHIMEARRERIRRAVENRSYSVCLVV 151
>06_03_1013 -
26896690-26896818,26897051-26897089,26897178-26897300,
26897822-26897902,26898048-26898138,26898325-26898396,
26898474-26898574,26899211-26899309,26899942-26900286
Length = 359
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = +2
Query: 233 FEHLQVANLESGGCKGNFEPHGDGRARPXXXXXXXXXXXXR-RQLGLLHARHALDLPHDS 409
+ +L N+ C + PHG+GR P + Q + RHAL + DS
Sbjct: 193 YNYLMGTNISFIDCFRDPGPHGNGRYSPEMLPEIEEKDFRKGAQWFAITRRHALLILADS 252
Query: 410 VLRGFILRFPLQANQLHPAGVQRSWNL-HFD 499
+ + +F L + P G+ +W++ H D
Sbjct: 253 L---YYKKFKLYCKMVDPGGI-ANWSVTHVD 279
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 407 YRVEDQAHGGHEGDPAVCG--D*AARDRHQEEVDAPAHLHGVRSSLCTLRIQGSLPEG 240
+ V D+A G PAV G D A D H V P HL + SLC +R LP G
Sbjct: 803 FSVADEAFSLVAG-PAVDGIADYCALDSHSPAV--PLHLVELHGSLCMVRDLRHLPHG 857
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,455,334
Number of Sequences: 37544
Number of extensions: 429446
Number of successful extensions: 1340
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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