Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_J18
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 320 6e-88
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 320 6e-88
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 320 6e-88
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 116 2e-26
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 113 1e-25
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 112 3e-25
Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 49 3e-06
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 35 0.047
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z47067-1|CAA87328.1| 776|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z75548-4|CAA99912.1| 117|Caenorhabditis elegans Hypothetical pr... 29 4.1
U41279-8|AAL02436.1| 307|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF016679-5|AAB66157.1| 485|Caenorhabditis elegans Hypothetical ... 29 4.1
AF016685-9|AAG24149.1| 330|Caenorhabditis elegans Seven tm rece... 28 5.4
U41279-10|AAK31426.2| 308|Caenorhabditis elegans Hypothetical p... 28 7.1
AC006832-8|AAF40000.1| 465|Caenorhabditis elegans Hypothetical ... 28 7.1
AL132877-10|CAB60850.1| 402|Caenorhabditis elegans Hypothetical... 27 9.4
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 320 bits (786), Expect = 6e-88
Identities = 150/174 (86%), Positives = 160/174 (91%), Gaps = 2/174 (1%)
Frame = -2
Query: 676 HSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKI 497
H+ISFIPPDGE+ELMRYRTTKDI LPFRVIPLVREV R KMEVKVV+KSNFKPSLL QK+
Sbjct: 265 HAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVREVSRNKMEVKVVVKSNFKPSLLAQKL 324
Query: 496 EVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT--K 323
EV+IPTP NTSGVQLIC+KGKAKYKA ENAIVWKIKRMAGMKE+Q+SAEI+LL T K
Sbjct: 325 EVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDLLSTGNVEK 384
Query: 322 KKWTRPPISMGFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
KKW RPP+SM FEVPFAPSG KVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE
Sbjct: 385 KKWNRPPVSMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 438
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 320 bits (786), Expect = 6e-88
Identities = 150/174 (86%), Positives = 160/174 (91%), Gaps = 2/174 (1%)
Frame = -2
Query: 676 HSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKI 497
H+ISFIPPDGE+ELMRYRTTKDI LPFRVIPLVREV R KMEVKVV+KSNFKPSLL QK+
Sbjct: 259 HAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVREVSRNKMEVKVVVKSNFKPSLLAQKL 318
Query: 496 EVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT--K 323
EV+IPTP NTSGVQLIC+KGKAKYKA ENAIVWKIKRMAGMKE+Q+SAEI+LL T K
Sbjct: 319 EVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDLLSTGNVEK 378
Query: 322 KKWTRPPISMGFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
KKW RPP+SM FEVPFAPSG KVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE
Sbjct: 379 KKWNRPPVSMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 432
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 320 bits (786), Expect = 6e-88
Identities = 150/174 (86%), Positives = 160/174 (91%), Gaps = 2/174 (1%)
Frame = -2
Query: 676 HSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKI 497
H+ISFIPPDGE+ELMRYRTTKDI LPFRVIPLVREV R KMEVKVV+KSNFKPSLL QK+
Sbjct: 265 HAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVREVSRNKMEVKVVVKSNFKPSLLAQKL 324
Query: 496 EVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT--K 323
EV+IPTP NTSGVQLIC+KGKAKYKA ENAIVWKIKRMAGMKE+Q+SAEI+LL T K
Sbjct: 325 EVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDLLSTGNVEK 384
Query: 322 KKWTRPPISMGFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
KKW RPP+SM FEVPFAPSG KVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE
Sbjct: 385 KKWNRPPVSMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 438
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 116 bits (278), Expect = 2e-26
Identities = 65/172 (37%), Positives = 93/172 (54%), Gaps = 1/172 (0%)
Frame = -2
Query: 673 SISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIE 494
+ISFIPPDGEFELM YR T + V V +++E V KS FK + +E
Sbjct: 255 TISFIPPDGEFELMSYRLTTQVKPLIWVEAAVERHAHSRVEYMVKAKSQFKRQSVANHVE 314
Query: 493 VKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKW 314
V IP P + S + G AKY NAIVW I+ G +E + + L +++
Sbjct: 315 VIIPVPSDVSAPKFKTGAGTAKYVPELNAIVWSIRSFPGGREYIMRSSFMLPSIGSEELE 374
Query: 313 TRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
RPPI++ FE+P + SG +VRYLK+ E S + + WVRY+ ++G Y+
Sbjct: 375 GRPPINVKFEIPYYTTSGLQVRYLKIIEK----SGYQALPWVRYVTQNGDYQ 422
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 113 bits (271), Expect = 1e-25
Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 1/172 (0%)
Frame = -2
Query: 673 SISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIE 494
+ISFIPPDG FELM YR T + + + +++ + KS FK +E
Sbjct: 251 TISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSRVSFIIKAKSQFKRRSTANNVE 310
Query: 493 VKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKW 314
+ IP P + + G KY ++A VW IK G KE L+A + L +++
Sbjct: 311 IIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPGGKEYLLTAHLSLPSVMSEESE 370
Query: 313 TRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
RPPI + FE+P F SG +VRYLK+ E S + + WVRYI ++G YE
Sbjct: 371 GRPPIKVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGEYE 418
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 112 bits (269), Expect = 3e-25
Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 1/172 (0%)
Frame = -2
Query: 673 SISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIE 494
+ISFIPPDG FELM YR T + + + +++ + KS FK +E
Sbjct: 251 TISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSRVSFIIKAKSQFKRRSTANNVE 310
Query: 493 VKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKW 314
+ IP P + + G KY ++A VW IK G KE L+A + L +++
Sbjct: 311 IIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPGGKEYLLTAHLSLPSVMSEESE 370
Query: 313 TRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
RPPI + FE+P F SG +VRYLK+ E + + + WVRYI ++G YE
Sbjct: 371 GRPPIKVKFEIPYFTTSGIQVRYLKIIEKR----GYQALPWVRYITQNGEYE 418
>Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical
protein K11D2.3b protein.
Length = 58
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = -2
Query: 310 RPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
RPPI + FE+P F SG +VRYLK+ E S + + WVRYI ++G YE
Sbjct: 8 RPPIKVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGEYE 54
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 49.2 bits (112), Expect = 3e-06
Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 4/173 (2%)
Frame = -2
Query: 670 ISFIPPDGEFELMRYRTTKD--ISLPFRVIPLVR-EVGRTKMEVKVVLKSNFKPSLLGQK 500
+SF+PPDG F L+ Y +++P V ++ + K+++ V K + L +
Sbjct: 248 LSFVPPDGNFRLLSYHIAAQNMVAIPIYVRQVISLKPNAGKLDLTVGPKLSMGKVL--ED 305
Query: 499 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKK 320
+ ++I P L+ G+ + + + W I ++ K + L + + T +
Sbjct: 306 VVLEITMPKCVQNCNLVASHGRIAFDPTTKLLQWTIGKIEVGKPSTLKGSVAVSGTTVAE 365
Query: 319 KWTRPPISMGFEV-PFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLY 164
PPIS+ F++ SG KV L ++ K + K V+YI ++G +
Sbjct: 366 ---NPPISLKFKINQLVLSGLKVNRLDMYGEK-----YKPFKGVKYITKAGKF 410
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
C27H6.1 protein.
Length = 1657
Score = 35.1 bits (77), Expect = 0.047
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Frame = -2
Query: 448 CLKGKAKYKASENAIVWKIKRM-----AGMKETQLSAEIELLETDTKKKWTRPPISMGFE 284
C G+AKY+ ++VW+I R+ A K L EL D + P + F
Sbjct: 1469 CAIGEAKYEHVYRSLVWRIPRLPEKHHAAYKSHLLKCRFELSSFDLMPEEFLPRCDVDFT 1528
Query: 283 VPFAP-SGFKVRYLKVFEPKLNYSDHD-VIKWVRYIGR 176
+P A S VR + V + + D D V K+VRY+ +
Sbjct: 1529 MPLATVSNTVVRSVSVEQ----HEDSDRVEKFVRYVAK 1562
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2
Query: 268 SGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
+G VR+L V+ + N +D D + +R I RSGLYE
Sbjct: 2015 TGSDVRHLLVYVTQTNPTDADPSELLRTIKRSGLYE 2050
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2
Query: 268 SGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
+G VR+L V+ + N +D D + +R I RSGLYE
Sbjct: 2015 TGSDVRHLLVYVTQTNPTDADPSELLRTIKRSGLYE 2050
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2
Query: 268 SGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 161
+G VR+L V+ + N +D D + +R I RSGLYE
Sbjct: 2015 TGSDVRHLLVYVTQTNPTDADPSELLRTIKRSGLYE 2050
>Z47067-1|CAA87328.1| 776|Caenorhabditis elegans Hypothetical
protein C43C3.1 protein.
Length = 776
Score = 29.9 bits (64), Expect = 1.8
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = -2
Query: 640 ELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSG 461
E +R R ++I +P V + + E+ +V K+N L Q EV+I T
Sbjct: 246 EEIRIRLEREIHRMNTTMPGVVCYDKLREELSIV-KNNLS-GLQKQVSEVEIRNNSLTQQ 303
Query: 460 VQLICLKGKAKYKASENAIVWKIKRMAGMKE--TQLSAEIELL 338
++ L+ K E+ + +KIK + M+E T +S E+E L
Sbjct: 304 IEFYRLEISENNKLFEDTLEFKIKEIEKMREQCTAISVELEKL 346
>Z75548-4|CAA99912.1| 117|Caenorhabditis elegans Hypothetical
protein R90.4 protein.
Length = 117
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -2
Query: 643 FELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTS 464
F+ + + D + FRV RE+ R +V V K N+ L +K +KIP
Sbjct: 31 FDRLMEESRTDSNGQFRVSGSKREISRIDPKVNVYHKCNYN-GLCSKKFTIKIPKDYINR 89
Query: 463 GVQ 455
G Q
Sbjct: 90 GSQ 92
>U41279-8|AAL02436.1| 307|Caenorhabditis elegans Hypothetical
protein C17C3.12b protein.
Length = 307
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 592 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKI 485
V PLVRE+ R K +LK F L+G KI+ K+
Sbjct: 55 VKPLVREMDRDARINKQLLKKAFDLKLMGLKIDPKL 90
>AF016679-5|AAB66157.1| 485|Caenorhabditis elegans Hypothetical
protein T28C12.2 protein.
Length = 485
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 22 LYTGIAITLNCICIGLFFLLYFSNIRTRCDSRSQLVLTV 138
LY GI + L+CI +F +L ++ + D R+Q+++ +
Sbjct: 290 LYNGITLALSCIISVIFHVLLGASRIGKIDKRNQMLIGI 328
>AF016685-9|AAG24149.1| 330|Caenorhabditis elegans Seven tm
receptor protein 87 protein.
Length = 330
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 525 KLLFSTTLTSILVRPTSRTSGMTRNGRDMSFVV 623
+L+FS T+ ++ S TSGM + D SFVV
Sbjct: 45 RLMFSYTIVEMVYSFLSFTSGMKAHSTDTSFVV 77
>U41279-10|AAK31426.2| 308|Caenorhabditis elegans Hypothetical
protein C17C3.12a protein.
Length = 308
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 592 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVK 488
V PLVRE+ R K +LK F L+G KI+ K
Sbjct: 55 VKPLVREMDRDARINKQLLKKAFDLKLMGLKIDPK 89
>AC006832-8|AAF40000.1| 465|Caenorhabditis elegans Hypothetical
protein ZK355.6 protein.
Length = 465
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 475 LNTSGVQLICL--KGKAKYKASENAIVWKIKRM 383
LN S ++ CL GK +A + VWK+K+M
Sbjct: 335 LNMSSLEPFCLFIYGKVVLEAGDEEFVWKLKKM 367
>AL132877-10|CAB60850.1| 402|Caenorhabditis elegans Hypothetical
protein Y105E8B.4 protein.
Length = 402
Score = 27.5 bits (58), Expect = 9.4
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Frame = -2
Query: 589 IPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASEN 410
+ L ++ T +VVLK+ ++ L E K +N KG + N
Sbjct: 98 VSLFLKMSATSPSKEVVLKAEYRFYFLDDNDEPKFSN-VNVGEFHAKPPKGGHSW-GLRN 155
Query: 409 AIVWKIKRMAGM-KETQLSAEIELLETDTKKKWTRPPISMGFEVPFA 272
K++ K +S IEL+ +K R PI+ E+PFA
Sbjct: 156 IPTQKVQNSIRQDKSLVISCHIELIPDASKVPCKRVPITPSIEMPFA 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,556,061
Number of Sequences: 27780
Number of extensions: 327342
Number of successful extensions: 1089
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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