Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J18
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.67 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = -1

Query: 635 HEVSHNKRHISAVPRHPARAGGGPHQDGS 549
           H + H   HI A P H       PH   S
Sbjct: 417 HTMGHGHSHIHATPHHHHSHAATPHHQHS 445


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 607 SLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSG 461
           SLP+     +  +   +M +   + S +     G+KI++  P  LN  G
Sbjct: 317 SLPYYKYKYLNVINALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLNMLG 365


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 607 SLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSG 461
           SLP+     +  +   +M +   + S +     G+KI++  P  LN  G
Sbjct: 317 SLPYYKYKYLNVINALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLNMLG 365


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 280 PFAPSGFKVRYLKVFEPKLNYSDHDVIKW 194
           PF PSG  ++ +     +LN+   D+ +W
Sbjct: 285 PFRPSGTVLKDINRQVDELNFDIQDLERW 313


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 436 SPSSKSVAPRWCSAELESSLRSSVRAGRA*SYSSAQP*LPSWCGPP 573
           S SS   A    S +++    S V A    +Y +    LP WC PP
Sbjct: 449 SSSSSRSAESPMSVQVDPMAASVVAAALTGTYPTL---LPQWCLPP 491


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 392 DLPHDSVLRGFILRFPLQANQLHP 463
           D   D+ LRG ++R   QANQ  P
Sbjct: 556 DPEEDAPLRGDLVRILKQANQSVP 579


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,778
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)