Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J17
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-8|AAA28214.1|   94|Caenorhabditis elegans Hypothetical pr...   115   3e-26
AF303260-1|AAG50218.1|   94|Caenorhabditis elegans 3H949 protein.     115   3e-26
AL132948-18|CAD31819.1|  390|Caenorhabditis elegans Hypothetical...    29   3.3  

>L14429-8|AAA28214.1|   94|Caenorhabditis elegans Hypothetical
           protein ZK652.3 protein.
          Length = 94

 Score =  115 bits (277), Expect = 3e-26
 Identities = 53/63 (84%), Positives = 59/63 (93%)
 Frame = -2

Query: 286 LSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTAGNVFLKHGSELRLIPRD 107
           LSVPE+TPFTAVLKFAAEEF+V  ATSAIIT+DG+G+NP Q AGN+FLKHGSELRLIPRD
Sbjct: 31  LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQPAGNIFLKHGSELRLIPRD 90

Query: 106 RVG 98
           RVG
Sbjct: 91  RVG 93


>AF303260-1|AAG50218.1|   94|Caenorhabditis elegans 3H949 protein.
          Length = 94

 Score =  115 bits (277), Expect = 3e-26
 Identities = 53/63 (84%), Positives = 59/63 (93%)
 Frame = -2

Query: 286 LSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTAGNVFLKHGSELRLIPRD 107
           LSVPE+TPFTAVLKFAAEEF+V  ATSAIIT+DG+G+NP Q AGN+FLKHGSELRLIPRD
Sbjct: 31  LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQPAGNIFLKHGSELRLIPRD 90

Query: 106 RVG 98
           RVG
Sbjct: 91  RVG 93


>AL132948-18|CAD31819.1|  390|Caenorhabditis elegans Hypothetical
           protein Y39B6A.22 protein.
          Length = 390

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 205 AIITDDGIGINPQQTAGNVFLKHGSELRLIPRDRVGFSL 89
           A+ TD   G  P    GNVFL+    +  +   R+GF++
Sbjct: 347 AMFTDSSTGFGPSFGFGNVFLRQYCNIFDVGNARIGFAI 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,376
Number of Sequences: 27780
Number of extensions: 283696
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)