Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J17
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.70 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.70 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   8.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 555  STRNGNA*LTSYYVCCSSGIFNLDNLNY*QSTSCRHIKVMRCG 683
            S  NG A LT Y +   +   NLD L   +  +   +K + CG
Sbjct: 1426 SGHNGGASLTGYTLHYRTAHGNLDELQLSRHATSHELKGLLCG 1468


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 555  STRNGNA*LTSYYVCCSSGIFNLDNLNY*QSTSCRHIKVMRCG 683
            S  NG A LT Y +   +   NLD L   +  +   +K + CG
Sbjct: 1422 SGHNGGASLTGYTLHYRTAHGNLDELQLSRHATSHELKGLLCG 1464


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 606 NYNKHNKKLVTHYHCVYYV 550
           NYN +NKKL   Y+ + Y+
Sbjct: 100 NYNNYNKKL---YYNINYI 115


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 630 DYLN*ISLNYNKHNKKL 580
           +Y N  + NYN +NKKL
Sbjct: 329 NYNNYNNNNYNNYNKKL 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,525
Number of Sequences: 438
Number of extensions: 3724
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)