Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J16
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    27   3.3  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    27   3.3  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   10.0 
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   10.0 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   10.0 

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -3

Query: 212 TFKMKTSKCIIGIITVSRELFLKISHYAFS*HLKTVYYSTFI 87
           ++KMK S  I+G+I ++  LFL +S+Y F    K   Y+ F+
Sbjct: 522 SYKMKLS-IILGVIHMTFCLFLSLSNYRFF-KRKLDIYAVFV 561


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 510 SIVSVVGGLRSLALAPTWSKRQLSFA-DQQGSGQNQHKYXS 629
           +I + +  ++ L L P WSKR++ +  D+   G  Q  Y S
Sbjct: 250 NIAAAIKAVQELPLNPKWSKRRIYYGRDRCAVGLKQPAYFS 290


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 68  FNQFSFIILYHXICKNYTKLST 3
           F Q S   LYH +C N  K +T
Sbjct: 584 FQQLSLSRLYHVLCSNRNKKNT 605


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 210 IQNENFQMHHWNNYCLERIIFENFTLRFFLAFKNSL 103
           + N NFQ+  +N   L+ I+F N  +  F  +K +L
Sbjct: 15  VTNNNFQVSCFNPILLKIILFLNTIVCIFYVYKIAL 50


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = -2

Query: 213 YIQNENFQMHHWNNYCLERIIFEN 142
           Y+ +E ++ HHW+++   R++ E+
Sbjct: 269 YMFDEMYRTHHWSSFTACRLMIES 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,118
Number of Sequences: 5004
Number of extensions: 51814
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)