Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J16
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0604 - 19215017-19215101,19215870-19216021,19216591-192166...    28   5.9  

>08_02_0604 -
           19215017-19215101,19215870-19216021,19216591-19216614,
           19216656-19216884,19217061-19217177,19219249-19219311,
           19219887-19220125
          Length = 302

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 453 LCFILDQF-VNSINGIFRGASIVSVVGGLRSLALAPTWSKRQLSFADQQGSGQNQHKYXS 629
           L F L+ F + SI G+ + ASI+  +GG   ++L   +  + L   D     QN+HK  S
Sbjct: 137 LMFRLEAFKLRSIPGVLKIASILLSIGGTMLISL---YKGKSLHLWDSIIQHQNEHK--S 191

Query: 630 ATHCLQ 647
           AT+ L+
Sbjct: 192 ATNQLR 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,891
Number of Sequences: 37544
Number of extensions: 282426
Number of successful extensions: 552
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)