Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_J13
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 166 3e-42
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal... 54 3e-08
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe... 29 0.93
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 28 1.2
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.1
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 27 3.8
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 27 3.8
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 5.0
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 26 6.6
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.7
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 8.7
SPBC216.06c |swi1||replication fork protection complex subunit S... 25 8.7
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 166 bits (403), Expect = 3e-42
Identities = 94/231 (40%), Positives = 136/231 (58%), Gaps = 2/231 (0%)
Frame = -1
Query: 729 KYEIIIVSDGSKDSTVKVAESYSIKYG-SDKVKCLELIKNRGKGGAVRLGIQSSRGATIL 553
++EI+IV D SKD+TV +S K D ++ L +NRGKGGAV G+ +RG +
Sbjct: 102 RWEILIVDDESKDTTVNAVLEFSNKLDLRDHLRVCSLKRNRGKGGAVTWGMLYARGQYAI 161
Query: 552 FADADGASKFEDLTKLEVALKDIVKCDPLKDVKTTSESLGIVIGSRAHL-EKESLAKRNI 376
FADADGAS+F DL E+ K++ G+V+GSRAH+ ++ KR+
Sbjct: 162 FADADGASQFSDL---ELLFKNM----------PPGPRGGVVVGSRAHMVNTAAVVKRSF 208
Query: 375 FRNILMYGFHFLVWLFTVKGIKDTQCGFKLFTRKAARICFESLHVNRWAFDVELLYIAQK 196
RN LM+ FH L+ + ++ I DTQCGFKLF+R+A + F +HV W FD+E+L +A+
Sbjct: 209 IRNFLMHCFHKLLQILGIREIGDTQCGFKLFSREAYQSIFPRMHVEGWIFDIEVLTLARF 268
Query: 195 LNIPISEIPVRWTEIEGSKVTPVVAWIQMGCDRGLSWLKERRGAWKRKSEK 43
+PI E+P+ W E+ GSK+T + I M D + L G W+R S K
Sbjct: 269 FGLPIIEVPITWHEVGGSKMTLLKDSISMAIDLLVIRLNYTFGIWERPSAK 319
>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 53.6 bits (123), Expect = 3e-08
Identities = 44/191 (23%), Positives = 81/191 (42%)
Frame = -1
Query: 726 YEIIIVSDGSKDSTVKVAESYSIKYGSDKVKCLELIKNRGKGGAVRLGIQSSRGATILFA 547
+EI+I+ D S D T +VA+ YG DK+ G G A G++ + G ++
Sbjct: 35 WEIVIIDDASPDGTQEVAKELQKIYGEDKILLKPRSGKLGLGTAYIHGLKFATGDFVIIM 94
Query: 546 DADGASKFEDLTKLEVALKDIVKCDPLKDVKTTSESLGIVIGSRAHLEKESLAKRNIFRN 367
DAD F K L + +K + IV+G+R + + + N+ R
Sbjct: 95 DAD----FSHHPKY---LPEFIKLQK-------EHNYDIVLGTR-YAKDGGVYGWNLKRK 139
Query: 366 ILMYGFHFLVWLFTVKGIKDTQCGFKLFTRKAARICFESLHVNRWAFDVELLYIAQKLNI 187
+ G + L G+ D F+L+ + + + F +E++ A++ N
Sbjct: 140 FISRGANLLASTVLGTGVSDVTGSFRLYKKPVLETLMSEVTSKGYVFQMEIIARAREHNY 199
Query: 186 PISEIPVRWTE 154
I E+P+ + +
Sbjct: 200 TIGEVPIAFVD 210
>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 28.7 bits (61), Expect = 0.93
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 495 GRLLISSNLQILRHHLHLQTISLHLSN 575
GR ++ N+++LR +LH + + H++N
Sbjct: 128 GRAVLYPNMKVLRDYLHWRQVDCHINN 154
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = -1
Query: 225 DVELLYIAQKLNIPISEIPVRWTEIEG 145
D +L+ IA+KLNI ++++ +RW+ +G
Sbjct: 206 DEKLVPIAKKLNISVAQLLIRWSLQKG 232
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 305 HSVASNFSLEKQQEYVLKAYM*TDGHLM*SYCISH 201
H NFSL + + Y++ Y+ +G CISH
Sbjct: 44 HYCLLNFSLRENKNYLIIVYLPIEGFSANHMCISH 78
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 189 IPISEIPVRWTEIEGSKVTPVVAWIQMGCDRGLSWLKE 76
I IS PVR T+ + + ++P W+ + + WL E
Sbjct: 395 IYISRTPVRHTQFDVNFLSPYCDWVIVEICKRAGWLNE 432
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 597 AVRLGIQSSRGATILFADADGASKFEDLTKLEVALKDIVKCD 472
+V+ I+ R ++ D + DL+K V+ +D+VKC+
Sbjct: 58 SVQKHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCE 99
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 471 DHISQYPLGRLLISSNLQILRHHLHLQTI 557
D++ +YP+ +L S+ QIL + H Q I
Sbjct: 140 DNVGRYPVSKLSCSTKNQILALYTHSQPI 168
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 408 LEKESLAKRNIFRNILMYG 352
L+ S AKR + RNIL+YG
Sbjct: 29 LKDHSKAKRTLCRNILLYG 47
>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 147 LRFLSTSLVFRILECLIFVRYTITLHQMPICLHVSFQNIFLL 272
+RFL+ ++ IL C+ V + H+M C S NI L+
Sbjct: 55 IRFLAKCFLY-ILRCMSTVSLLSSAHKMNCCNFYSNYNILLV 95
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 8.7
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = -1
Query: 711 VSDGSKDSTVKVAESYSIKYGSDKVKCLELIKNRGKGGAVRLGIQSSRGATILFADADGA 532
++ GS D T+++ + D +C++ ++ G GA+ I S+G ++ A ADG
Sbjct: 522 LASGSGDRTIRI-------WNVDTQQCVQTLE--GHTGAILKLIYISQGTQVVSAAADGL 572
Query: 531 SKFEDLTKLE 502
K L+ E
Sbjct: 573 VKVWSLSSGE 582
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = -1
Query: 264 ICFESLHVNRWAFDVELLYIAQKLNIPISEIPVRWTEIEGSKVTPVVAWIQMG 106
+ F + + R F+ +Y +KL+ + ++P + E+ K+T +++ G
Sbjct: 626 VYFSTTNSARQDFEQFFVYYMRKLSDALKDVPALFIELPFPKLTDTFYYLEYG 678
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,440
Number of Sequences: 5004
Number of extensions: 62910
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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