Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J13
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853...   196   2e-50
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184...    60   2e-09
03_02_0017 + 5001812-5002062,5003849-5003977,5005045-5005108,500...    31   1.3  
12_01_0366 + 2779754-2779882,2780007-2780047,2780163-2780212,278...    28   6.9  
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254...    28   6.9  
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386...    28   9.1  

>03_06_0489 -
           34284301-34284336,34285104-34285227,34285307-34285371,
           34285472-34285555,34285661-34285789,34285887-34285976,
           34286116-34286250,34286939-34286984,34287119-34287225,
           34287355-34287412,34287524-34287765
          Length = 371

 Score =  196 bits (477), Expect = 2e-50
 Identities = 103/206 (50%), Positives = 133/206 (64%), Gaps = 6/206 (2%)
 Frame = -1

Query: 735 SYKYEIIIVSDGSKDSTVKVAESYSIKYGSDKVKCLELIKNRGKGGAVRLGIQSSRGATI 556
           S+ YE++IV DGS D T KVA  +  K+  D V+ L L +N GKG AVR G+  SRG  +
Sbjct: 147 SFTYEVLIVDDGSTDHTSKVAFEFVRKHKIDNVRVLLLGRNHGKGEAVRKGMLHSRGELL 206

Query: 555 LFADADGASKFEDLTKLEVALKDIVKC--DPLKDVKTTSESLG----IVIGSRAHLEKES 394
           L  DADGA+K  DL KLE  ++ + K     L    + S+ L      V GSRAHLEK++
Sbjct: 207 LMLDADGATKVTDLEKLEAQVRALAKKAESSLAPSSSPSQRLSDAEIAVFGSRAHLEKQA 266

Query: 393 LAKRNIFRNILMYGFHFLVWLFTVKGIKDTQCGFKLFTRKAARICFESLHVNRWAFDVEL 214
           LA R  +RN LM GFH +V L    GI+DTQCGFK+FTR AAR  F ++ + RW FDVEL
Sbjct: 267 LATRKWYRNFLMKGFHLVVLLTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVEL 326

Query: 213 LYIAQKLNIPISEIPVRWTEIEGSKV 136
           +Y+ + L IP++E+ V WTEI GSKV
Sbjct: 327 VYLCKHLRIPMAEVSVNWTEIPGSKV 352


>03_06_0508 +
           34417540-34417649,34418239-34418338,34418445-34418478,
           34418559-34418635,34418929-34419005,34419060-34419224,
           34419306-34419420,34419546-34419650
          Length = 260

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 2/200 (1%)
 Frame = -1

Query: 747 KXNPSYKYEIIIVSDGSKDSTVKVAESYSIKYGSDKVKCLELIKNRGKGGAVRLGIQSSR 568
           K  P   +EII+V DGS D T  + +     YG ++V      +  G G A   G++ + 
Sbjct: 34  KHLPDVNFEIIVVDDGSPDGTQDIVKQLQQIYGENRVLLRARPRKLGLGTAYLHGLKHAS 93

Query: 567 GATILFADADGASKFEDLTK-LEVALKDIVKCDP-LKDVKTTSESLGIVIGSRAHLEKES 394
           G  ++  DAD +    ++++ LE +   +        D K   E+   V+    +++   
Sbjct: 94  GDFVVIMDADLSHHMLEISETLEQSPLQLDSYQGYYTDKKKQKETGADVVTGTRYVQNGG 153

Query: 393 LAKRNIFRNILMYGFHFLVWLFTVKGIKDTQCGFKLFTRKAARICFESLHVNRWAFDVEL 214
           +   N+ R +   G + L       G  D    F+L+ R        S     + F +E+
Sbjct: 154 VHGWNLMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRNVLEDLISSCVSKGYVFQMEM 213

Query: 213 LYIAQKLNIPISEIPVRWTE 154
           +  A +    I E+P+ + +
Sbjct: 214 IVRATRKGYHIEEVPITFVD 233


>03_02_0017 +
           5001812-5002062,5003849-5003977,5005045-5005108,
           5007229-5007501
          Length = 238

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 113 CIQATTGVTFDPSISVHLTGISDIGMFNFCAIYNNSTSNAHLFTCKLS 256
           C QA  GV    + SV++ G++ I  FN   +Y NS       T  ++
Sbjct: 188 CAQAGGGVACAIAASVNMVGVALISAFNLFRLYGNSNGGGKATTTTMA 235


>12_01_0366 +
           2779754-2779882,2780007-2780047,2780163-2780212,
           2780824-2780968,2781298-2781354,2781448-2781571,
           2781798-2782259,2782493-2782564
          Length = 359

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 500 TSNFVKSSNFEAPSASANNIVAPLELCMPSLTAPPF 607
           ++N V  + F  PS+S+ ++VAP    MP  TA PF
Sbjct: 248 STNLVTPAFFAPPSSSSASLVAPASSFMP--TASPF 281


>11_01_0342 +
           2548147-2548275,2548385-2548425,2548521-2548570,
           2548830-2548974,2549854-2549859,2550122-2550245,
           2550422-2550877,2550960-2551013
          Length = 334

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 500 TSNFVKSSNFEAPSASANNIVAPLELCMPSLTAPPFPLFFINSRHFTLSLP 652
           ++N V  + F  PS+S+ ++V P    MP  TAPP      +++  T   P
Sbjct: 231 SANLVTPAFFTPPSSSSTSMVPPASSMMP--TAPPLHPTSASAQRATYGTP 279


>04_04_0861 +
           28836544-28836609,28838191-28838264,28838551-28838671,
           28838832-28839143,28839241-28839345,28839447-28839901,
           28840116-28840417,28840589-28840767,28841256-28841446,
           28841595-28841728,28841875-28842113
          Length = 725

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 485 ISFRATSNFVKSSNFEAPSASANNIVAPLE--LCMPSLT 595
           ISF+   +F KSS+   P+ S + + A LE  L  P LT
Sbjct: 458 ISFKEPGHFAKSSDTAQPAESGHQVNANLEEGLAQPLLT 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,942,141
Number of Sequences: 37544
Number of extensions: 362023
Number of successful extensions: 992
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)