Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J09
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   199   2e-52
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   199   2e-52
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    42   5e-05
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    27   2.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   3.7  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   6.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.5  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  199 bits (486), Expect = 2e-52
 Identities = 89/117 (76%), Positives = 103/117 (88%)
 Frame = -1

Query: 492 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 313
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 312 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 142
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPG
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPG 117


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  199 bits (486), Expect = 2e-52
 Identities = 89/117 (76%), Positives = 103/117 (88%)
 Frame = -1

Query: 492 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 313
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 312 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 142
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPG
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPG 117


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 23/62 (37%), Positives = 38/62 (61%)
 Frame = -1

Query: 366 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 187
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 186 AG 181
            G
Sbjct: 104 RG 105


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 406 FLEFFVRPSLFTTVVHVLTRRSYSSGFTHL-DSTTPIGYGWEKKLIGLAIGQPLASRRQI 582
           FL FF  PSL T+V  V   + +      L DS  P    + K  +    G+ L+ R  I
Sbjct: 220 FLRFFESPSLNTSVAKVYINQKFIRKLLVLFDSEDPRERDFLKTTLHRIYGKFLSLRAFI 279

Query: 583 KRS 591
           +RS
Sbjct: 280 RRS 282


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 185 ATSTSSFSSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 301
           ++S S F S+WFRQ +       AVT+F   MS    HL  A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 429 WADKEFKKAHMGTKWKANPFGGASHAKGIV 340
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 423 PPIAVHDGGSRAYAP 467
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,224
Number of Sequences: 5004
Number of extensions: 49722
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)