Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_J09
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 205 2e-53
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 201 4e-52
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 148 3e-36
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 40 0.002
12_02_1099 - 26072301-26072468,26072642-26072751,26072966-260730... 31 0.95
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 30 1.3
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 3.8
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 28 5.1
04_01_0440 + 5746474-5746662,5746895-5747251 28 5.1
01_06_0352 + 28638453-28639391,28639486-28640034,28640388-286411... 28 5.1
01_01_0357 - 2816650-2817897 27 8.9
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 205 bits (501), Expect = 2e-53
Identities = 90/122 (73%), Positives = 103/122 (84%)
Frame = -1
Query: 507 CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 328
C ++ MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224
Query: 327 GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDI 148
G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDI
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284
Query: 147 PG 142
PG
Sbjct: 285 PG 286
Score = 201 bits (490), Expect = 4e-52
Identities = 89/117 (76%), Positives = 100/117 (85%)
Frame = -1
Query: 492 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 313
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 312 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 142
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPG
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPG 116
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 201 bits (490), Expect = 4e-52
Identities = 89/117 (76%), Positives = 100/117 (85%)
Frame = -1
Query: 492 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 313
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 312 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 142
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPG
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPG 116
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 148 bits (359), Expect = 3e-36
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = -1
Query: 486 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 307
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 306 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 181
NSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = -1
Query: 201 DEVLVAGFGRKGHAVGDIPG 142
DEVL++GFG KGHAVGDI G
Sbjct: 67 DEVLISGFGHKGHAVGDIRG 86
>12_02_1099 -
26072301-26072468,26072642-26072751,26072966-26073014,
26073081-26073495,26073604-26074019
Length = 385
Score = 30.7 bits (66), Expect = 0.95
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 130 GGKXSQRGAPRAXQREKGATKSRGGH 53
GG RGAPRA Q GA R GH
Sbjct: 98 GGAEPSRGAPRARQLNFGAAGGRAGH 123
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +2
Query: 167 PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLA-STPTFSRT 343
P P+T S S+ F P T+A + PF + + A STP F+ +
Sbjct: 277 PFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSSSLFANSTPGFASS 336
Query: 344 MPF 352
PF
Sbjct: 337 SPF 339
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 152 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 262
+PT P PNP ST SM F+ PS A FP
Sbjct: 3 TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 170 LRPNPATSTSSFSSMWFRQPSRGT 241
L P+ +T T +FS WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 433 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 335
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>01_06_0352 +
28638453-28639391,28639486-28640034,28640388-28641195,
28641279-28641389,28641556-28641683
Length = 844
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 130 GGKXSQRGAPRAXQREKGATKSRGGH 53
GG R APRA Q GA R GH
Sbjct: 98 GGAGPSRAAPRARQLNFGAVGGRAGH 123
>01_01_0357 - 2816650-2817897
Length = 415
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 153 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 239
H+ ++ DR+PPLVLR + G R G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,558,012
Number of Sequences: 37544
Number of extensions: 394267
Number of successful extensions: 1000
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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