Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J09
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   220   6e-58
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    51   7e-07
AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical ...    31   0.86 
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  220 bits (538), Expect = 6e-58
 Identities = 97/117 (82%), Positives = 108/117 (92%)
 Frame = -1

Query: 492 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 313
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 312 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 142
           QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPG
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPG 117


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = -1

Query: 366 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 187
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 186 AGFGRK 169
            G GR+
Sbjct: 129 KG-GRR 133


>AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical
           protein Y55D5A.3 protein.
          Length = 355

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 26/106 (24%), Positives = 40/106 (37%)
 Frame = +1

Query: 124 YHLKTXSGNVTDGVTFTTESRH*YXXXXXXXXXATVTGDECGHFLSVLNELYTDAFADGR 303
           Y +     N+T  V F       Y           +TG   G +   LN  Y+ A+ D  
Sbjct: 142 YDMTELLKNITIHVDFVRNGTIQYSGLTFALYNGVLTGQRPGEYSVSLNARYSGAYIDNI 201

Query: 304 VGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFT 441
             L+ FYT F    +  +R   E  +    T+   ++ F R  LF+
Sbjct: 202 --LMEFYTKFKRPVSFFIRDVLENQA----TYTEAVDAFSRTHLFS 241


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 421 VRPSLFTTVVHVLTRRSYSSG 483
           VRP + TTV+HV+ R    SG
Sbjct: 189 VRPGIMTTVIHVMDRNPMKSG 209


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 249 TAFVPRDGCLNHIEEN 202
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,884,584
Number of Sequences: 27780
Number of extensions: 297415
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)