Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J07
         (302 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0176 - 17575155-17575761,17575935-17575972                       27   2.8  
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    27   3.7  
04_01_0498 - 6525263-6525616                                           27   3.7  
07_03_0142 - 14251959-14252230,14252244-14252316                       26   4.9  
05_03_0217 + 10401876-10401948,10401962-10402233                       26   4.9  
02_01_0780 - 5818597-5819181                                           26   4.9  
06_02_0009 + 10561257-10561751                                         26   6.5  
08_02_0522 + 18141101-18141176,18141207-18141322,18141694-18141939     25   8.6  
06_01_0666 - 4873797-4874057,4874327-4874455                           25   8.6  

>06_03_0176 - 17575155-17575761,17575935-17575972
          Length = 214

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 206 KSSGGKWCRRAGGRCWWTSRSSLRDRR 286
           +  GG+  RR     WW+SR +   RR
Sbjct: 80  RGRGGRGARRGPATRWWSSRRATTSRR 106


>06_01_0090 -
           724296-724532,724756-724938,725038-725088,725520-725639,
           725738-725840,726106-726264,726728-726846,726891-727004,
           727119-727277,727404-727451,728464-728640,729064-729116,
           729549-729661,729793-729873,729966-730081,730786-730905,
           732321-732429,732593-732770,732852-732920,733102-733233,
           733657-733766,733843-734003,734081-734171,734258-734355,
           734499-734619,734732-734892,734985-735090,735142-735236,
           735828-735852,736008-736084,736196-736282,736372-736421,
           736558-736639,736735-736795,737064-737116,737206-737395,
           737472-737595,737860-737962,738064-738156,740344-740422,
           740508-740584,740915-741043,742614-742731,742816-742913,
           743457-743546,744998-745123,745238-745351,745488-745611,
           745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 221 KWCRRAGGRCWWTSRSSLRDRR 286
           KWCR  G R  WTS  ++   R
Sbjct: 337 KWCRYLGKRVAWTSLEAVNKNR 358


>04_01_0498 - 6525263-6525616
          Length = 117

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 209 SSGGKWCRRAGGRCWWTSRSSLRDRRGC 292
           +SG   C   GGR WW        RRGC
Sbjct: 2   ASGAGMC--GGGRGWWLGGVGAGGRRGC 27


>07_03_0142 - 14251959-14252230,14252244-14252316
          Length = 114

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 221 KWCRRAGGRCWWTSRSSLRDRRG 289
           +W R AG R W   R S R RRG
Sbjct: 8   RWMRMAGRRRWLKRRRSGRCRRG 30


>05_03_0217 + 10401876-10401948,10401962-10402233
          Length = 114

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 221 KWCRRAGGRCWWTSRSSLRDRRG 289
           +W R AG R W   R S R RRG
Sbjct: 8   RWMRMAGRRRWLKRRRSGRCRRG 30


>02_01_0780 - 5818597-5819181
          Length = 194

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 208 LIAFSVPAPDQPL 170
           L+AF++P PDQPL
Sbjct: 24  LVAFTLPTPDQPL 36


>06_02_0009 + 10561257-10561751
          Length = 164

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 212 SGGKWCRRAGGRCWW 256
           + G WCR A G  WW
Sbjct: 5   AAGGWCRAAVGPWWW 19


>08_02_0522 + 18141101-18141176,18141207-18141322,18141694-18141939
          Length = 145

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 203 DKSSGGKWCRRAGGR 247
           D S GG WCRR   R
Sbjct: 130 DSSGGGSWCRRDEAR 144


>06_01_0666 - 4873797-4874057,4874327-4874455
          Length = 129

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 197 KRDKSSGGKWCRR 235
           +R +S GG WCRR
Sbjct: 56  RRRRSGGGSWCRR 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,095,357
Number of Sequences: 37544
Number of extensions: 107302
Number of successful extensions: 252
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)