Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_J04
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 298 4e-82
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 297 6e-82
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 297 9e-82
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.43
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 1.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.0
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.0
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 3.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.0
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 26 5.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.0
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 9.2
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.2
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 298 bits (732), Expect = 4e-82
Identities = 136/195 (69%), Positives = 163/195 (83%)
Frame = -3
Query: 637 RNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 458
RNR KYAL G EV I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGR
Sbjct: 49 RNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGR 108
Query: 457 FTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 278
FT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T K
Sbjct: 109 FTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNK 168
Query: 277 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 98
I FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+I
Sbjct: 169 IESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVI 228
Query: 97 GKGTKAYISLPRGQG 53
G+ K++ISLP+G+G
Sbjct: 229 GETGKSWISLPKGKG 243
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 57 KGIRLTIAEERDKRIA 10
KG++L+I EERD+R A
Sbjct: 242 KGVKLSITEERDRRRA 257
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 297 bits (730), Expect = 6e-82
Identities = 135/195 (69%), Positives = 163/195 (83%)
Frame = -3
Query: 637 RNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 458
RNR KYAL G EV I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGR
Sbjct: 49 RNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGR 108
Query: 457 FTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 278
FT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T K
Sbjct: 109 FTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNK 168
Query: 277 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 98
I FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+I
Sbjct: 169 IESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVI 228
Query: 97 GKGTKAYISLPRGQG 53
G+ K++ISLP+G+G
Sbjct: 229 GEAGKSWISLPKGKG 243
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 57 KGIRLTIAEERDKRIA 10
KG++L+I EERD+R A
Sbjct: 242 KGVKLSITEERDRRRA 257
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 297 bits (729), Expect = 9e-82
Identities = 135/195 (69%), Positives = 163/195 (83%)
Frame = -3
Query: 637 RNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 458
RNR KYAL G EV I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGR
Sbjct: 49 RNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGR 108
Query: 457 FTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 278
FT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T K
Sbjct: 109 FTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNK 168
Query: 277 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 98
I FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+I
Sbjct: 169 IESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVI 228
Query: 97 GKGTKAYISLPRGQG 53
G+ K++ISLP+G+G
Sbjct: 229 GETGKSWISLPKGKG 243
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 57 KGIRLTIAEERDKRIA 10
KG++L+I EERD+R A
Sbjct: 242 KGVKLSITEERDRRRA 257
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.43
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +2
Query: 74 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 199
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 1.7
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -3
Query: 586 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 407
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 406 VK-RVATGPKNVPYLVTHDGR 347
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 320 QSQRFHPVRHCNYED 276
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 262 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 158
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 107 HVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLDEVHNLRS 286
H P GEG R V N + + +H+P+ S+ +T PGLK + + +
Sbjct: 287 HNTTPDGEGKYRSV---QNGRALNYVSSFNSDSHSPKDYISQSYTNEPGLKKESADSFNN 343
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -3
Query: 520 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 344
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 343 IR 338
++
Sbjct: 1778 LK 1779
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 149 LDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLD 265
LD+H V S+ D A T + AS DH VPG K +
Sbjct: 174 LDLHQVAQVAQSVI--DNAAT--IAASLDHCAVPGRKFE 208
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 425 SLLRGDTVDCESALNIID*TKQ 490
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 205 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 110
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 9.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 123 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLM 266
V + P ES M + K+ L T P RP L+P + + P S L+
Sbjct: 414 VRERAPEESPMTFLQKKMAALP--TSSPVRPMLKPTLQLQNSPLSKLV 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,183
Number of Sequences: 5004
Number of extensions: 57550
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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