Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_J04
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 280 6e-76
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 280 8e-76
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 279 2e-75
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 30 1.8
12_02_0735 - 22636835-22639502,22639755-22640734 29 2.4
11_06_0087 - 19919224-19922304 29 2.4
04_03_1015 - 21734381-21736534 29 2.4
06_01_0083 - 659510-661267,661577-662384,662700-663646 29 3.1
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 4.1
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 28 5.4
02_05_0202 + 26708049-26709074 28 5.4
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.4
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 28 7.2
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 7.2
10_08_0978 + 21994359-21996961,21997089-21998229 27 9.5
10_08_0964 + 21906737-21907993 27 9.5
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 9.5
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 280 bits (687), Expect = 6e-76
Identities = 126/195 (64%), Positives = 156/195 (80%)
Frame = -3
Query: 637 RNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 458
RNR KYALT EV+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGR
Sbjct: 65 RNRLKYALTYREVISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGR 124
Query: 457 FTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 278
F +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T K
Sbjct: 125 FRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNK 184
Query: 277 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 98
I+DFIKF+ GN+ M+TGGRN GRVG I SRE+H GSF+ +H++D+ GH FATR+ NVF I
Sbjct: 185 IVDFIKFDVGNIVMVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTI 244
Query: 97 GKGTKAYISLPRGQG 53
GK K ++SLP+G+G
Sbjct: 245 GKERKPWVSLPKGKG 259
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 280 bits (686), Expect = 8e-76
Identities = 124/195 (63%), Positives = 156/195 (80%)
Frame = -3
Query: 637 RNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 458
RNR KYALT EV+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGR
Sbjct: 49 RNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGR 108
Query: 457 FTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 278
F + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T K
Sbjct: 109 FRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNK 168
Query: 277 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 98
I+DFIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF I
Sbjct: 169 IVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTI 228
Query: 97 GKGTKAYISLPRGQG 53
GKG K ++SLP+G+G
Sbjct: 229 GKGNKPWVSLPKGKG 243
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 279 bits (683), Expect = 2e-75
Identities = 123/195 (63%), Positives = 156/195 (80%)
Frame = -3
Query: 637 RNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 458
RNR KYALT EV+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGR
Sbjct: 49 RNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGR 108
Query: 457 FTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 278
F + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T K
Sbjct: 109 FRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNK 168
Query: 277 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 98
I+DFIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF I
Sbjct: 169 IVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTI 228
Query: 97 GKGTKAYISLPRGQG 53
GKG K ++SLP+G+G
Sbjct: 229 GKGNKPWVSLPKGKG 243
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 102 MNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 224
+N +F L V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 90 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 185
PL NT+ +++A PVE L C +S + G L
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGAL 456
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 387 DLRMFRTW*RMMAA-PSAIQTHLSKSTIPSS*TLQLRRL 274
DL R W +A PS HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = -1
Query: 423 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 298
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 90 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 185
PL NT+ +++A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGAL 445
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -1
Query: 204 APSCPARDI--PAPSTLCTSRTPRDTPSP 124
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 123 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPD 254
V KV PV+SL C + C+S + + PVI+ + D
Sbjct: 165 VLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYID 208
>02_05_0202 + 26708049-26709074
Length = 341
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 158 HNVEGAGMSLAGHDGAHTPQVTASRDHTQVPG 253
+ V +G +L GH +H A+ H Q PG
Sbjct: 268 YRVFASGQALGGHKKSHVCSAAAAAAHAQTPG 299
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 487 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 383
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 127 RRCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 222
+RC+P S A +CR+SR S+ W P+ S+
Sbjct: 423 QRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -3
Query: 361 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 227
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>10_08_0978 + 21994359-21996961,21997089-21998229
Length = 1247
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 163 IVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGQGHPPHHRRGAG 23
I H G A + +++ T+ I+LP G GH H G G
Sbjct: 968 ISHYTHCDGLVLAPTITKLYLFNPATREAITLPDGHGH--SHTAGLG 1012
>10_08_0964 + 21906737-21907993
Length = 418
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -3
Query: 163 IVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGQGHPPHH 38
+ H G A N+++ T+ I+LP G G HH
Sbjct: 139 VCHFAHCDGLVLAPTDTNLYLFNPATRDTITLPDGHGDNHHH 180
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 518 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 613
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,912,554
Number of Sequences: 37544
Number of extensions: 445122
Number of successful extensions: 1415
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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