Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J03
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...    83   2e-17
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    27   1.2  
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.1  
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...    25   4.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   4.8  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   4.8  
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    24   6.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   6.3  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    24   8.3  

>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score = 82.6 bits (195), Expect = 2e-17
 Identities = 37/47 (78%), Positives = 40/47 (85%)
 Frame = -2

Query: 219 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIXLKKW 79
           M+EV CNDRLGKKVRVKC PDDTVGD KKL+AAQTGT   +I LKKW
Sbjct: 1   MIEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKW 47



 Score = 37.1 bits (82), Expect = 8e-04
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = -3

Query: 65  KDHIKLADYEIHDGMNLEL 9
           KD+I LADYEIHDGM+LE+
Sbjct: 52  KDNITLADYEIHDGMSLEM 70


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +3

Query: 150 RYRQGCI*LEPSYRVD-HCMLLQAFCSQISSQFY*EIKYINSNFLFVLVILPPFKIFTAV 326
           R +Q C   E   R+   C L + F   +S +      +I+ + + VL++LPPF     +
Sbjct: 51  RSKQNCRLKEIYCRLKIRCRLKKKFIKSLSKKII-SYHFISFHTIVVLLLLPPFSHLLVL 109

Query: 327 L--MVFITFFF 353
           +   VF T F+
Sbjct: 110 VYPSVFTTAFY 120


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 117 FVRLLTSLNHPRY 155
           FV+ +TSLNHP Y
Sbjct: 87  FVKYITSLNHPEY 99


>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 165 NPDDTVGDLKKL 130
           NPDDT+ +LKK+
Sbjct: 243 NPDDTIAELKKI 254


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -2

Query: 222  KMLEVTCNDRLGKKVR--VKCNPDDT 151
            +++EV CNDR G +    +K +P++T
Sbjct: 1872 EVIEVVCNDRSGHRQSSVIKIDPNET 1897


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 98  LSYLVPVCAAINFFKSPTVSSGLHLTRT 181
           +S + P+C+A+    + T+S+ L + +T
Sbjct: 172 ISVIAPICSALGTVVATTISTPLDIVKT 199


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 128 INFFKSPTVSSGLHLTRTFLPSRSLHVTSSILL 226
           +N F+     S    ++ FLP R +HVT + L+
Sbjct: 49  VNTFQPVEKESLRRPSKVFLPHRIMHVTDACLI 81


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 231  ISSQFY*EIKYINSNFLFVLVILPPFKIFT 320
            ISS  Y ++ + +SNFLF  + +  + + T
Sbjct: 1204 ISSTLYLKVSFCSSNFLFKTISVLVYDLIT 1233


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 140 KSPTVSSGLHLTRTFLPSRSLHVTSSILLSNQLSVLLRNKIYK 268
           K+P  +SGL  + +F P + + + +  LL  Q  V   NK ++
Sbjct: 458 KNPLAASGLQSSLSFTPIQGIELVNP-LLQRQQKVEEANKWFR 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,280,475
Number of Sequences: 5004
Number of extensions: 20872
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)