Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_J03
(364 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88173-3|AAK21382.1| 73|Caenorhabditis elegans Ubiquitin-like ... 92 1e-19
U97000-8|AAC47999.1| 347|Caenorhabditis elegans Seven tm recept... 30 0.57
AF003130-1|AAB54124.2| 423|Caenorhabditis elegans Hypothetical ... 27 3.0
AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical ... 27 5.3
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 26 7.0
AL023811-1|CAA19422.2| 947|Caenorhabditis elegans Hypothetical ... 26 7.0
AF000266-6|AAC71167.1| 228|Caenorhabditis elegans Hypothetical ... 26 9.3
>U88173-3|AAK21382.1| 73|Caenorhabditis elegans Ubiquitin-like
family protein 5 protein.
Length = 73
Score = 91.9 bits (218), Expect = 1e-19
Identities = 39/49 (79%), Positives = 45/49 (91%)
Frame = -2
Query: 219 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIXLKKWXT 73
M+E+T NDRLGKKVR+KCNP DT+GDLKKLIAAQTGTR++KI LKKW T
Sbjct: 1 MIEITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYT 49
Score = 35.5 bits (78), Expect = 0.011
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -3
Query: 65 KDHIKLADYEIHDGMNLEL 9
KDHI L DYEIH+G N EL
Sbjct: 52 KDHITLMDYEIHEGFNFEL 70
>U97000-8|AAC47999.1| 347|Caenorhabditis elegans Seven tm receptor
protein 136 protein.
Length = 347
Score = 29.9 bits (64), Expect = 0.57
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 198 HCMLLQAFCSQISSQF-Y*EIKYINSNFLFVLVILPPFKIFTAVLMVFITFFFQF 359
HC+L S +S QF Y + ++ L L F IFT ++VFI +F F
Sbjct: 99 HCVLTGFVASLLSCQFFYRYVALCKTHLLVYLQGKKLFLIFTPSVIVFIIWFIMF 153
>AF003130-1|AAB54124.2| 423|Caenorhabditis elegans Hypothetical
protein F55A12.6 protein.
Length = 423
Score = 27.5 bits (58), Expect = 3.0
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 96 FCRI*CQFVRLLTSLNHPRYRQGCI*LEPSYRVDHCMLLQAFCSQISSQFY*EIKYINSN 275
+CR+ QFV + S PRY C P+Y+ + C + A S F + K ++
Sbjct: 195 YCRV-AQFVDYVGST--PRYYCDCPPYAPNYQWNQCSPMSARALSPMSVFSHKPKLSRNS 251
Query: 276 FLFVLVIL 299
F F L ++
Sbjct: 252 FFFQLNLM 259
>AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical
protein Y71D11A.5 protein.
Length = 508
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 89 SRNGTQDXKDHIKLADYEIHD 27
S NG Q +D ++LADYE+ D
Sbjct: 223 SVNGVQKMRDKMELADYELVD 243
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 170 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 259
L RTF P RS H ++ N+L LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 170 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 259
L RTF P RS H ++ N+L LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 170 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 259
L RTF P RS H ++ N+L LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 170 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 259
L RTF P RS H ++ N+L LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719
>AL023811-1|CAA19422.2| 947|Caenorhabditis elegans Hypothetical
protein C51F7.1 protein.
Length = 947
Score = 26.2 bits (55), Expect = 7.0
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 101 SYLVPVCAAINFFKSPTVSSGLHLTRTFLP-SRSLHVTSSILLSNQL 238
++++P +F S T+S LHL+ +F+P + S TSS +++ L
Sbjct: 844 AFVLPTHRGDYYFDSATLSQNLHLS-SFVPMTTSTTTTSSATMTSSL 889
>AF000266-6|AAC71167.1| 228|Caenorhabditis elegans Hypothetical
protein W08F4.3 protein.
Length = 228
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 176 RTFLP-SRSLHVTSSILLSNQLSVL 247
R FLP S ++HVTS I L LSV+
Sbjct: 171 RGFLPLSSTVHVTSGISLGEPLSVI 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,959,768
Number of Sequences: 27780
Number of extensions: 113736
Number of successful extensions: 318
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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