Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_J03
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    26   0.12 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   1.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   7.8  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 26.2 bits (55), Expect = 0.12
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 349 KNVINTIKTAVKILNGGKITKTNKK 275
           KNV  T+   V+I+ GG +T  N K
Sbjct: 193 KNVNQTVAETVRIIYGGSVTAGNAK 217


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 135 SLNHPRYRQ 161
           ++NHPRYRQ
Sbjct: 337 AINHPRYRQ 345


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 135 SLNHPRYRQ 161
           ++NHPRYRQ
Sbjct: 337 AINHPRYRQ 345


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 255 IKYINSNFLFVLVILPPFKIFTAVLMV 335
           I++I + +L  L+   PF I+T V +V
Sbjct: 159 IRFILAAWLIALISAIPFAIYTKVNLV 185


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 161 GLHLTRTFLPSRSLHVTSSI 220
           G HL  T++PS  + V S I
Sbjct: 214 GYHLFHTYIPSALIVVMSWI 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,175
Number of Sequences: 438
Number of extensions: 1363
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)