Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_J01
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 155 1e-38
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 155 2e-38
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 33 0.13
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 31 0.51
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754... 31 0.51
11_01_0570 - 4529901-4529962,4530725-4530800,4531247-4531306,453... 29 1.6
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 29 1.6
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 29 2.1
08_02_0101 + 12374476-12376683 29 2.7
06_03_0493 + 21402536-21404599 29 2.7
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 28 3.6
05_04_0167 + 18668004-18668287,18668961-18669043,18669346-186694... 28 3.6
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243... 27 6.3
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 27 6.3
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350... 27 6.3
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536... 27 8.3
11_01_0247 - 1892248-1892602,1892835-1893112,1893371-1893392,189... 27 8.3
09_02_0084 + 4106803-4106851,4108165-4108460 27 8.3
09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,255... 27 8.3
06_01_0828 + 6250860-6250992,6251082-6251211,6251284-6251989 27 8.3
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 155 bits (377), Expect = 1e-38
Identities = 74/120 (61%), Positives = 89/120 (74%)
Frame = -3
Query: 440 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 261
+ VE P P+L G MD+ ALQ V+K + H GLV GL EAAKA++K A LCVLAE+
Sbjct: 4 ETPVEAPPAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 260 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFG 81
CD+ Y KLV+ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KDFG
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFG 122
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 155 bits (375), Expect = 2e-38
Identities = 73/120 (60%), Positives = 89/120 (74%)
Frame = -3
Query: 440 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 261
+ VE P P+L G MD+ ALQ V+K + H GLV GL EAAKA++K A LCVLAE+
Sbjct: 4 ETPVETPAAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 260 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFG 81
CD+ Y KLV+ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KD+G
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYG 122
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 33.1 bits (72), Expect = 0.13
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = -3
Query: 335 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 156
L G+ E K++ + Q LC++A N V LC E IP V V + + L AG
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLAT-AG 103
Query: 155 LCK 147
K
Sbjct: 104 TTK 106
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 31.1 bits (67), Expect = 0.51
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = -3
Query: 335 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 156
L G+ E K++ + LCV+A N V LC E IP + V + + L AG
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLAT-AG 103
Query: 155 LCK 147
K
Sbjct: 104 TTK 106
>02_05_0105 +
25874155-25874495,25874586-25874615,25875327-25875433,
25875884-25875918,25876310-25876438,25877103-25877294
Length = 277
Score = 31.1 bits (67), Expect = 0.51
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 362 APLAVLHSRPCCYPTRWGWWGPRLQHQP 445
+PLA +RPC +PT W P L+ P
Sbjct: 7 SPLAAAAARPCAFPTPWRCRSPPLRRLP 34
>11_01_0570 -
4529901-4529962,4530725-4530800,4531247-4531306,
4533797-4533959,4534037-4534091,4534314-4534366,
4534881-4534980,4535556-4535703,4535964-4536056
Length = 269
Score = 29.5 bits (63), Expect = 1.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 369 LQCYIHVHVVTRQDGVGGDLDF 434
++CY H H++T+ +G GGD +
Sbjct: 213 IECYEHNHLITKVEGDGGDSSY 234
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -3
Query: 329 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 168
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 130 YGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLG 183
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -3
Query: 329 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 168
+GL +++ +A L V+A + D + ALC + +IP V +LG
Sbjct: 115 YGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLG 168
>08_02_0101 + 12374476-12376683
Length = 735
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 386 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENC--DEAAYKKLVQALC 219
V + L+ L+TA + L+HGL A + + + A++C D Y +V LC
Sbjct: 131 VLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLC 188
>06_03_0493 + 21402536-21404599
Length = 687
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = -3
Query: 380 VALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIP 201
V E+L T LIHG ++ E A L + D + Y L+Q LCN H++
Sbjct: 394 VRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL---ELDISLYGALIQGLCNVHKLD 450
Query: 200 LVK 192
K
Sbjct: 451 EAK 453
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 269 AENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 168
A CDE +K + +CN + L + D+N +G
Sbjct: 316 AFKCDEYTVRKCSKVICNRSKNSLYRFDSNASIG 349
>05_04_0167 +
18668004-18668287,18668961-18669043,18669346-18669434,
18670085-18670158,18670234-18670284,18671486-18671553,
18671666-18672234,18672333-18672383
Length = 422
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 200 VESDVRCTEPEQVSCMQLHHSSQPKHIVLLA 292
+ES ++ TEP + + LH +S+P +VL A
Sbjct: 268 IESSMQRTEPYKFPSLGLHSNSKPSSVVLSA 298
>08_02_1034 +
23823194-23823307,23823399-23823620,23823984-23824309,
23824648-23824777,23825145-23825441,23825550-23825815,
23827835-23828333,23828902-23828993,23829571-23829735,
23829817-23830204,23830275-23830393,23830494-23830524,
23830675-23830880,23830970-23831014,23831120-23831201,
23832210-23832398,23834499-23834602,23834669-23834759,
23835097-23835225,23835425-23835556,23835779-23835949,
23836143-23836171,23836214-23836301,23836313-23836391,
23836666-23836844
Length = 1390
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 389 DVNVALQEVLKTALIHGGLVHGLHEAAKALD 297
D+ V L + L++ I GLV +H+AA++++
Sbjct: 554 DIRVKLVKALQSEDISTGLVQSIHDAARSIE 584
>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = +2
Query: 107 SSRQFS-LPCHPCQSCRD 157
SSR+FS LPC PC S RD
Sbjct: 1207 SSREFSVLPCQPCCSERD 1224
>03_06_0769 +
36134298-36134356,36134740-36134919,36134975-36135007,
36135008-36135128,36135227-36135266,36135811-36135863,
36135937-36135998,36136354-36136506,36136949-36137160,
36137480-36138972,36140560-36141483,36141734-36142043,
36143818-36143874,36144114-36144167,36144452-36144510
Length = 1269
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -1
Query: 193 RLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISDEETPALDVLQGLPASRRA 26
R+ S N + + + ++ K S + SSK SD E + L+ LPA A
Sbjct: 820 RIAARSSTSNSISTPQQVKVKPSPKTSPSTYKSSKFSDAEPGSFSPLRKLPARTTA 875
>11_06_0013 -
19252779-19252805,19252947-19253090,19253572-19253663,
19253757-19253835,19253965-19254031,19254163-19254254,
19254986-19255102,19255254-19255365,19255479-19255594,
19255680-19255756,19255912-19255993,19256077-19256214,
19258806-19259009
Length = 448
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3
Query: 350 LIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKL 171
++ GG HG+HE +D R+ L + + A LV ALC +I L +V + +
Sbjct: 139 ILQGGFFHGIHELTYGVDIRKIRLMGVLQ---RIAIAYLVVALC---EIWLRRVSSGGNI 192
Query: 170 G 168
G
Sbjct: 193 G 193
>11_01_0247 -
1892248-1892602,1892835-1893112,1893371-1893392,
1894613-1895268
Length = 436
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 33 RLAGSPCSTSNAGVSSSEIFDDNTGAADNFPCLAILVNL 149
RL+ +P S A + EI+D A+ FP L+ L
Sbjct: 6 RLSSAPESADEATAHNKEIYDQLRRVAETFPSAPSLIGL 44
>09_02_0084 + 4106803-4106851,4108165-4108460
Length = 114
Score = 27.1 bits (57), Expect = 8.3
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -3
Query: 389 DVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEH 210
D+ A +L A+ GL +A + DK Q L +N EAA K QAL
Sbjct: 42 DIANAAAPILN-AIFQNGLGSSFDDAVELFDKLQCALDKYYKNIAEAATKWASQALAMTK 100
Query: 209 QIPLVKVDNN 180
+ +K +N
Sbjct: 101 TLNQLKFCSN 110
>09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,
2550893-2550988,2551418-2551482,2551558-2551591,
2552469-2552540,2552567-2552644,2553416-2553477,
2554267-2554530,2555057-2555246,2555432-2555500,
2555613-2555669,2555746-2555846,2556029-2556146,
2556225-2556272,2556362-2556487,2556960-2557118,
2558119-2558216,2558324-2558416,2559741-2559937,
2560231-2560354,2561121-2561334,2561773-2561830,
2561955-2562433
Length = 1022
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = -3
Query: 407 LSGNNMDVNV-ALQEVLKTALIHGGLVHGLHEAAKALDKRQA--VLCVLAENCDEAAYKK 237
L G M+ N+ AL V+ T + G + + +D +A + ++ +C+ Y +
Sbjct: 881 LIGLFMEFNLKALMGVIITTFLGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSR 940
Query: 236 LVQALCNEHQIPLVKVDNN 180
++ L +EH I K D N
Sbjct: 941 VISVLGDEHIIIFAKRDIN 959
>06_01_0828 + 6250860-6250992,6251082-6251211,6251284-6251989
Length = 322
Score = 27.1 bits (57), Expect = 8.3
Identities = 24/99 (24%), Positives = 41/99 (41%)
Frame = -3
Query: 455 STTMADVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLC 276
S+++ ++ V+VP + + S + D QE+ KT L +V+G + D
Sbjct: 217 SSSVPELAVQVPHSQMPS-TSFD-----QEIGKTNLFSNNIVNGNEWCSMEADNSSQKSL 270
Query: 275 VLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWA 159
++ EN VQ CN P N+ L W+
Sbjct: 271 LVPENSIPPLIDMPVQNFCNTISTPNCDGGNSIPLPSWS 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,430,329
Number of Sequences: 37544
Number of extensions: 300432
Number of successful extensions: 1093
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -