Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I24
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.3  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   7.0  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   7.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.3  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 514 FRLINPNMMVLGQEPRQTTSNLGHLQKPSVQ 422
           +RL NP ++     P+  +++   LQ+PS++
Sbjct: 426 YRLYNPALIQSQPSPQYPSTSSHILQQPSIR 456


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
 Frame = -2

Query: 430 SVQALIHGLNRHYYSISINYRKNELEQKMLLNLHK--KSWMDGL--TLSDYKEHCSVNES 263
           +V   I+ +  H   + +N +K+  E K         +S   G   T S Y    S +  
Sbjct: 181 NVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRD 240

Query: 262 TVTDMLELAKNYNKALEDEEKMTPEQLAIKNVGK 161
              +  E  + Y K   ++EK+  E+ + K   +
Sbjct: 241 RNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSR 274


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 138 SKCLLGSCLPTFLMANCSGV 197
           ++ ++G CLPT    NC+ +
Sbjct: 107 AQSVMGKCLPTSGSDNCNKI 126


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 138 SKCLLGSCLPTFLMANCSGV 197
           ++ ++G CLPT    NC+ +
Sbjct: 107 AQSVMGKCLPTSGSDNCNKI 126


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/42 (28%), Positives = 15/42 (35%)
 Frame = +2

Query: 5   HHPRYFKPYCXS*LSHQKSFEYQSVKHSS*TLDYVVGHEHIH 130
           HHPRY +P          S  Y   K      +Y   H+  H
Sbjct: 155 HHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYNWEHKETH 196


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 415 IHGLNRHYYSISINYRKNELEQKMLLNL 332
           IH  N  Y   + NY  N   +K+  N+
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKKLYYNI 116


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 415 IHGLNRHYYSISINYRKNELEQKMLLNL 332
           IH  N  Y   + NY  N   +K+  N+
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKKLYYNI 116


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 538 KGKVVIDAFRLINPNMMVL 482
           +GK+++D F ++N  +M L
Sbjct: 260 QGKLIVDFFMILNEIIMKL 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,832
Number of Sequences: 438
Number of extensions: 3495
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)