Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I22
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.0  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    25   9.0  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   9.0  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   9.0  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 354 GSVASYNQLTKFRANTYVD*FQCNTIHTLVNILYIY 461
           GS+        F    Y+D F  +   +L+NIL++Y
Sbjct: 866 GSLEQIRNTDLFILQKYIDYFSSHPHDSLINILHLY 901


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 578 EGRRQQGFPLSQLDSQ*V*ILLPFEARVTNYNVCTVIFEVNIQYIYKS 435
           E ++Q+  P S + S    I + +E R+ NY +     E  IQY YKS
Sbjct: 212 ESQKQRIKPWSGIASM---IQIDYEKRLQNYPIWKACIEERIQY-YKS 255


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 294 FFDTHTTATYLLLWIYNNSFYYIVITPAFH 205
           F +T   +TYLL WI     Y    TP  H
Sbjct: 196 FAETCRMSTYLLAWIVAELEYVEYFTPGKH 225


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 458 NIQYIYKSVYCITLKSVYVGIGSKFCELI 372
           N+QY YK ++C  +K V  G+ + F   I
Sbjct: 5   NLQYPYKVLWCAQVKVVKTGLINFFAPSI 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,634
Number of Sequences: 5004
Number of extensions: 48784
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)