Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I22
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-4|CAE17846.1|  116|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL034364-4|CAA22250.2|  290|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z72510-4|CAE17846.1|  116|Caenorhabditis elegans Hypothetical
           protein F53B7.7 protein.
          Length = 116

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 383 CELIITCNAAWGLTCFRGKE*R-GRIRLKFYFLIHILLLHTYY 258
           C +  TC+   G  C R +     R+ +    L H  L+HTYY
Sbjct: 29  CAISNTCSLCEGAACLRVQRNHLNRVSIALTCLPHDTLIHTYY 71


>Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical
           protein F11C1.3 protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 473 VIFEVNIQYIYKSVYCITLKSVYVGIGSKFCELIITCNAAWGLTCFRGK 327
           V+ +  + YIY +   +T+ ++ +G+G  F  + +     WG   FR K
Sbjct: 493 VMKDYAVNYIYFNT--VTIPNIVLGLGIGFTAVSLIAVLLWGFCYFRSK 539


>AL034364-4|CAA22250.2|  290|Caenorhabditis elegans Hypothetical
           protein W06D4.2 protein.
          Length = 290

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 3   LFALLFQXSLFPVPSLHVSTQXH--ALXCXGXFFTKYYTNL*RSRFKLIHSLSSV*RLKS 176
           +FALLF   + P P + ++ Q    A      F T +  ++    F ++ SL ++  +  
Sbjct: 181 MFALLFDNGILPTPLVSLNRQSFFIAFASISVFITTFLASIVLGSFSIVISLFNIVHVTG 240

Query: 177 YY 182
            Y
Sbjct: 241 LY 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,129,854
Number of Sequences: 27780
Number of extensions: 267353
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)