Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I21
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    33   0.031
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   0.88 
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   2.7  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    25   4.7  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   4.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   4.7  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   8.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   8.2  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 32.7 bits (71), Expect = 0.031
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = -1

Query: 306 APALDISARLESTIPRDRSLYRSQRLSTRTPRQLYQKTPRRNHQGSAPVSTG*RNSAKDG 127
           +P  D  +   S  PR RS  RS    +R+P    +++P+RNH+  +PVS   + S  + 
Sbjct: 127 SPYNDERSDRRSMSPRYRSRSRSPDGRSRSP-DYDRRSPKRNHRSPSPVSFAPQKSPVEN 185

Query: 126 EYATD 112
           E  T+
Sbjct: 186 ETETN 190


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 247  LPEPKAVYPDATPALPEDAEKKPPRLGSR 161
            +P P A+ P  TP LP  + + PP   +R
Sbjct: 1040 VPSPSALSPSVTPQLPPVSSRLPPVSATR 1068


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -3

Query: 319 LNLP---RPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPE 197
           +NLP    P  GYF     + +  P P+  P A Y  A+  + E
Sbjct: 227 VNLPGAQEPNRGYFSPMHTYSSAVPGPISVPSAPYGRASSTIAE 270


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 13  HRRTRLFETPKMSDFYSNSRCY 78
           H R  + +TP   DF +NS C+
Sbjct: 86  HLRLTVIDTPGFGDFINNSGCW 107


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 454 FRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKL 317
           F K+K + +  F    NC  K   ++      K  GV  QC +EKL
Sbjct: 558 FEKLK-SWMPGFGDPKNCTGKRVDEHKINSLVKEFGVSLQCFVEKL 602


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 250 PLPEPKAVYPDATPALPEDAEKKPP 176
           P+P P ++ P A P+LP  A    P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLP 440


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 207 LYQKTPRRNHQGSAPVSTG*RNSAKDGEYATDKLERDDAVLPII 76
           L Q+  RRN+Q S+P +   R                D+V+PI+
Sbjct: 491 LTQRRNRRNNQSSSPPAPSDRRYTMGARRPVQTRGMTDSVIPIL 534


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 259 RPKPLPEPKAVYPDATPALPEDAEKKPPR 173
           RP   P P  +   +T   P+D    PPR
Sbjct: 414 RPTESPPPPPISSSSTTPRPDDKPSLPPR 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,291
Number of Sequences: 5004
Number of extensions: 33278
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)