Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_I21
(492 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025723-5|AAK29936.2| 183|Caenorhabditis elegans Hypothetical ... 65 2e-11
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 27 5.6
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 27 5.6
AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical ... 27 5.6
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 27 7.4
AF099918-4|AAN63402.1| 243|Caenorhabditis elegans Hypothetical ... 27 7.4
AF099918-3|AAN63401.1| 436|Caenorhabditis elegans Hypothetical ... 27 7.4
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 9.8
>AC025723-5|AAK29936.2| 183|Caenorhabditis elegans Hypothetical
protein Y54F10AM.5 protein.
Length = 183
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/98 (31%), Positives = 49/98 (50%)
Frame = -3
Query: 490 EGKXVTACTLEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKLNL 311
EG +TAC + F + +K++CL + + + C+D+SS C Q D C+ LNL
Sbjct: 62 EGAALTACGVNFLQSLKRSCLPQTQKLAECVDQSSAKLYMSKCHDDQKELDACVEANLNL 121
Query: 310 PRPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPE 197
RP GYF + V+D+ P + + +A L E
Sbjct: 122 TRPKLGYFSKLHVYDSATAAPEVKLRDYKAEAAKVLNE 159
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical protein
ZK430.1 protein.
Length = 1650
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 436 TCLAE-FNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKLNLP 308
TC+ ++Q+++ + +S+GD R+CR D L LN P
Sbjct: 1226 TCIQRVYDQFASFVVESTGDVIIRYCRLIARFGDPSELLALNQP 1269
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 256 PKPLPEPKAVYPDATPALPEDAEKKPPR 173
PK PEPK + P PA+P+ P+
Sbjct: 273 PKKEPEPKKMAPKIPPAVPKSLVSPEPK 300
>AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical
protein Y39C12A.8 protein.
Length = 365
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 279 LESTIPRDRSLYRSQRLSTRTPRQLYQKTPRRNHQGSAPVSTG*RN 142
L++ + +LY+ + +Q Y T R+NH+ S P S G RN
Sbjct: 89 LQNAETSNENLYKRCNRNKNQRKQEYSNTQRQNHKKSEP-SNGKRN 133
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 274 VHDTKRPKPLPEPKAVYPDATP-ALPEDAEKKPP 176
VH++K P P +P+ D P A+ + EK+PP
Sbjct: 833 VHESKLPSPSFDPQTSESDEEPMAVFVEEEKRPP 866
>AF099918-4|AAN63402.1| 243|Caenorhabditis elegans Hypothetical
protein H05C05.2b protein.
Length = 243
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 307 RPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPEDAEKKPPRLGSRFY 155
RP +G +R HD + PK + V P TP+ P + P +Y
Sbjct: 61 RPNYGDVTTSR-HDVESPKNVVNNFVVTPIETPSTPVQYPPQAPFSDENYY 110
>AF099918-3|AAN63401.1| 436|Caenorhabditis elegans Hypothetical
protein H05C05.2a protein.
Length = 436
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 307 RPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPEDAEKKPPRLGSRFY 155
RP +G +R HD + PK + V P TP+ P + P +Y
Sbjct: 254 RPNYGDVTTSR-HDVESPKNVVNNFVVTPIETPSTPVQYPPQAPFSDENYY 303
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 26.6 bits (56), Expect = 9.8
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Frame = -3
Query: 442 KKTCLA-EFNQYSNCLDKSS--GDYAFRHCRKTQGVFDQC----MLEKLNLPRPGFG-YF 287
K C++ +F + L+K + G Y RKT + C +LE + P F
Sbjct: 281 KNKCMSFQFRNKTCTLNKGNHLGQYDLIEQRKTLYQYVGCDPEILLETASSKCPNFKPKS 340
Query: 286 CEARVHDTKRPKPLPEPKAVYPDATPALPEDAEKKPPR 173
E + DTK+ P +PK A E E K P+
Sbjct: 341 AEKKKPDTKKETPTKKPKVELVTAKTVEGEKKETKKPK 378
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 256 PKPLPEPKAVYPDATPALPEDAEKKP 179
P PL P + P P LP + +K P
Sbjct: 1379 PPPLFSPSMILPPPPPPLPSEEKKNP 1404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,327,774
Number of Sequences: 27780
Number of extensions: 195835
Number of successful extensions: 666
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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