Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I21
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.1  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 123 YATDKLERDDAVLPIIT 73
           +A D++ RD+ +LP IT
Sbjct: 90  FAVDQINRDEDILPGIT 106


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 277 RVHDTKRPKPLPEPKAVYP 221
           +VH TK PKP  + K   P
Sbjct: 244 KVHATKPPKPQTKTKPTSP 262


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 463 LEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQ 335
           ++F  +V + C   FN     + +    YA  H +  Q  F+Q
Sbjct: 523 IDFKIEVTEDCNKSFNDLLTQVAELDQIYADTHAKLVQAAFEQ 565


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 120 ATDKLERDDAVLPIIT 73
           A D++ RD+ +LP IT
Sbjct: 1   AVDQINRDEDILPGIT 16


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 264 PRDRSLYRSQRLSTRTPRQLYQKTPRRN 181
           PR  +L +    +T TP+++ Q   RR+
Sbjct: 421 PRRATLAQLHNFTTMTPQEIAQWIDRRS 448


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 331 CTDQRHLESSGNA 369
           C+D  H ESS NA
Sbjct: 73  CSDVHHFESSFNA 85


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 388 SGDYAFRHCRKTQGVF 341
           S DY F  CR   G F
Sbjct: 288 SSDYGFTECRCDPGYF 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,245
Number of Sequences: 438
Number of extensions: 2776
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)