Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_I20
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 70 2e-12
02_05_1108 - 34166672-34166695,34166864-34166932,34167031-341671... 40 0.002
02_05_1103 - 34136955-34136978,34137147-34137215,34137314-341374... 40 0.002
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 40 0.002
03_01_0593 + 4379263-4379377,4380359-4380491,4380585-4380656,438... 30 1.6
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411... 29 2.9
02_04_0592 - 24171698-24172285 29 2.9
03_01_0343 - 2699518-2700114 29 3.8
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 29 5.0
02_05_0959 + 33086498-33086544,33087295-33087967,33088665-330890... 28 8.7
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 70.1 bits (164), Expect = 2e-12
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Frame = -2
Query: 677 SKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPV 498
+K GE +V +E+P ATI+R + + G+EDR L + + +PL +G +T QPV
Sbjct: 109 AKAAGEESVLKEFPEATIMRPATMIGTEDRILNRWA-QFAKNWGFLPLVDSG-STKIQPV 166
Query: 497 FVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 336
+V DVA IVN+ +DD T + Y+ GP+ Y + +L + Y+ +R +W YI
Sbjct: 167 YVVDVAAAIVNSLKDDGTSMGKTYELGGPEIYTVHELAELMYETIR---EWPRYI 218
>02_05_1108 -
34166672-34166695,34166864-34166932,34167031-34167154,
34167192-34167256,34167726-34167854,34168473-34168547,
34171613-34171777,34171864-34172063,34172866-34172963,
34173719-34173819,34173915-34174040
Length = 391
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -2
Query: 506 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 336
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>02_05_1103 -
34136955-34136978,34137147-34137215,34137314-34137437,
34137475-34137539,34138009-34138137,34138756-34138830,
34141896-34142060,34142147-34142346,34143149-34143246,
34144002-34144102,34144198-34144323
Length = 391
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -2
Query: 506 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 336
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>02_05_1100 -
34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -2
Query: 506 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 336
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>03_01_0593 +
4379263-4379377,4380359-4380491,4380585-4380656,
4380739-4380813,4380896-4380967,4381055-4381126,
4381251-4381322,4381403-4381468,4381547-4381612,
4381689-4381978,4382072-4382355,4382690-4382961,
4383411-4383546,4383840-4383970,4384078-4384234,
4384334-4384477
Length = 718
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 212 NVVIGVPTLEDLGVTLTHMEDQVPWELKPFRAHQYYMDRLGEFPKPDPPP 63
NV+ +P L+DL V H +P +LK Q + P P PPP
Sbjct: 216 NVLANLP-LDDLNVANNHFTGWIPSQLKKINNLQTDGNSWSNGPAPPPPP 264
>07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,
4110567-4110621,4111046-4111143,4112259-4112417,
4112518-4112577,4113436-4113624,4113749-4113802,
4113959-4114045,4114149-4114881,4115282-4115373,
4115739-4115812,4116097-4116199,4116342-4117204,
4117649-4117724,4117861-4117972,4118092-4118168,
4118272-4118352,4118710-4118789,4118860-4118875
Length = 1059
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -2
Query: 572 VNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEVYQAVG 417
+NK + H+ + PLYK ++ P+F+S + + V TK +Y+A G
Sbjct: 876 LNK-KFHARIKPLYKQRFFSILMPIFLSKIKESTVMT-----TKLVLYRAFG 921
>02_04_0592 - 24171698-24172285
Length = 195
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -2
Query: 206 VIGVPTLEDLGVTL--THMEDQVPWEL-KPFRAHQYYMDRLGEFPKPDPPPVDSA 51
++G P +DL + T M+D+V L + + Y +++L + P+ DPPP A
Sbjct: 124 LVGEPRRKDLWILCRQTSMDDEVYGRLLEKAKEEGYDVEKLRKTPQDDPPPESDA 178
>03_01_0343 - 2699518-2700114
Length = 198
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +2
Query: 416 AQRLGRLHI*CRRRARHSRYPERRPTQTQAVS 511
AQ LG H+ RR RH P RRPT T S
Sbjct: 40 AQALGG-HMNIHRRHRHRAMPSRRPTATGTTS 70
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -2
Query: 212 NVVIGVPTLEDLGVTLTHMEDQVPWELKPFRAHQYYMDRLGEFPKPDPPPVDS 54
+V+ +P L DL V +P +LK + Q + G P P PPP S
Sbjct: 178 DVLADLP-LTDLNVANNQFTGWIPDKLKKIKNLQTNGNSFGSGPSPPPPPYQS 229
>02_05_0959 +
33086498-33086544,33087295-33087967,33088665-33089058,
33089140-33089210,33089373-33089497,33089705-33089821,
33094128-33094238,33094321-33094413,33094726-33094984,
33095067-33095189
Length = 670
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +1
Query: 124 KGFSSHGTWSSMCVKVTPKSSRVGTPITTLSEVASLSIPSQ*RFPSG*AGEMALTKATFR 303
K SSHG K S++ + +TTL+ A+ +PS R P G ++K FR
Sbjct: 19 KKMSSHG----FSTKGGDAGSKLPSTVTTLNPNAAEFVPSTFRSPFGSRTVADVSKPDFR 74
Query: 304 GSIG 315
G G
Sbjct: 75 GLSG 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,972,847
Number of Sequences: 37544
Number of extensions: 515462
Number of successful extensions: 1315
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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