Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I20
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...   108   5e-24
U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical p...    32   0.37 
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score =  108 bits (259), Expect = 5e-24
 Identities = 76/209 (36%), Positives = 105/209 (50%), Gaps = 5/209 (2%)
 Frame = -2

Query: 677 SKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHS-NLMPLYKNGLATVKQP 501
           SK LGE AVREE+P ATIIR S IYG  D F++  V++ R    + + LYK G  T K P
Sbjct: 196 SKGLGEVAVREEFPEATIIRPSVIYGELDGFIQYYVSRWRKTPLDYVYLYKKGEETYKMP 255

Query: 500 VFVSDVAQGIVNAARDDDTKCEVYQAVGPKRYLLADLVDWFYKLMRKDEKWG-GYIRYDM 324
           ++V DVA GI +A  D   K   Y+ VGP  Y L++L+D+ YK       +G  Y R+ M
Sbjct: 256 IWVGDVAAGIQSAVNDPTAKGHTYEFVGPHCYQLSELIDFMYKKAHCLSDFGFRYKRHGM 315

Query: 323 --KYDPILPLKVALVNAISPAYPLGNLHWEGIEREATSDNVVIGVPTLEDLGV-TLTHME 153
              Y   L +   L   +       N  W  +E      +++ G  TL DLGV  LT  E
Sbjct: 316 PDPYFMALTMATELYGKVFKCKVPLNREW--MEFVEVQSDILTGERTLADLGVRRLTEFE 373

Query: 152 DQVPWELKPFRAHQYYMDRLGEFPKPDPP 66
                +      ++Y+ ++ GE P P  P
Sbjct: 374 LAGGQQAFYRSFNRYFEEQYGELPAPSLP 402


>U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical
           protein T20D4.8 protein.
          Length = 460

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = -2

Query: 347 GGYIRYDMKYDP----ILPLKVALVNAISPAYP-LGNLHWEGIEREATSDNVVIGVPTLE 183
           G YI  D   DP    I  LK+ L+N  +  +     +H E +++E  S+     + TLE
Sbjct: 68  GTYITLDQILDPDSLMIWYLKIELLNTTTADFDYFFKMHSEYVKKENKSEKFSFVMETLE 127

Query: 182 DLGVTLTHM 156
           ++ VTLT++
Sbjct: 128 NVNVTLTNI 136


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 296  LSGAVSGRTSCRSECIHPIFRPSSLVCKTNQPNRQVSSVLAQRLGRLHI*C 448
            L G  S    CR+    P     + +C TN P R  +  + ++LGR    C
Sbjct: 1763 LPGVKSTTCLCRTGFAGPQCEEITDICSTNNPCRNGARCIGEKLGRFKCQC 1813


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/84 (28%), Positives = 33/84 (39%)
 Frame = +1

Query: 58  STGGGSGFGNSPSRSM*Y*WARKGFSSHGTWSSMCVKVTPKSSRVGTPITTLSEVASLSI 237
           ST  G  FGN PS       ++  F      S+     +      G   T + +V SLS 
Sbjct: 315 STSAGGSFGNQPSSFS----SKPSFGGAFGASTSVTGSSSMGGSFGNKSTKVPDVESLSP 370

Query: 238 PSQ*RFPSG*AGEMALTKATFRGS 309
           P   R PS  +G    +K +F  S
Sbjct: 371 PEILRNPSNTSGGAFGSKPSFAAS 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,260,606
Number of Sequences: 27780
Number of extensions: 418496
Number of successful extensions: 1023
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)