Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I18
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    28   1.3  
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    27   3.0  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    26   6.9  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.2  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   9.2  

>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 503 ENRLSMLIMVPNPGVSLASMFMKFKELSLDSFFEELRISKEEFSD 369
           EN  + +I  P+ G++  S     KE+S+D   EE+ +  EE+ D
Sbjct: 148 ENTFTQIISEPSHGITFESWE---KEISIDGKTEEISLLLEEYPD 189


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 659 IPFNTSSTSKLPFYNSKGEKIGEVNMMYN 573
           +PF+    S L   NS GE IG   M YN
Sbjct: 62  VPFSLMKPSDLVHINSDGEIIGGSKMKYN 90


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -3

Query: 761 NFTHGKIPKIVDTGSFQDSQMLLTSALYFKGQWTIPFNTSSTSKLPFYNSKGEKIGEVNM 582
           +F H  I ++ D  SF +S+    S  +FK          S  K P YN+  E++G V  
Sbjct: 514 SFPHNYIKRMGDVYSFAESKNAELSFRFFK------LALKSKYK-PLYNTIAERVGSVGR 566

Query: 581 M 579
           M
Sbjct: 567 M 567


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 659 IPFNTSSTSKLPFYNSKGEKIGEV 588
           IP++ S T ++ FY S+G   GE+
Sbjct: 32  IPYSLSLTKQIRFYASEGTDAGEM 55


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 501 FYTVWQFNDSCV*YFNVR 554
           ++T +QFND  + YFN+R
Sbjct: 289 WFTTYQFNDFNLAYFNIR 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,163
Number of Sequences: 5004
Number of extensions: 60607
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)