Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I18
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          27   0.26 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.79 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   1.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   4.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.7  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 605 EKIGEVNMMYNRHTYPFSNIKILNARVIE-LPYGVENRLSMLIMVPNPGVSLASMF 441
           +++   NM   RH      +K+  A  ++ LP+GVEN +S    VP P  SL   +
Sbjct: 16  QQVMRQNMKLKRHLAQ-DKVKVRVAEEVDPLPFGVENTIS---SVPQPPRSLEGSY 67


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 495 LVNVNHGAKPWCFTCKYVHEV 433
           LV ++ G+ PW   CK++ E+
Sbjct: 916 LVELSLGSNPWSCRCKFLQEL 936


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = +3

Query: 213 HFRHKHRSPSHMW*NSFP----RIKQILNTHGILQHR 311
           HF+ KH     ++   F     R K  L TH  LQHR
Sbjct: 24  HFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHR 60


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 458 SLASMFMKFKELSLDSFFEELRISKEEFSDD 366
           S  +MF KF  L    +F+E  ++    +D+
Sbjct: 458 SFFNMFKKFASLKKSPYFKEANLNTRMLNDN 488


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 410 FFEELRISKEEFSDDEVDCFIPRFKIESNLDM 315
           F  ++     E  D  VD F+ +  IES LDM
Sbjct: 18  FVADINSINVEDMDFRVDMFVRQSWIESRLDM 49


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 99  EGTICLKSYNSYSVAEFCDC 158
           +G   LK Y  +S AEF DC
Sbjct: 100 KGGRLLKPYPDWSFAEFKDC 119


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 458 SLASMFMKFKELSLDSFFEELRISKEEFSDD 366
           S  +MF KF  L    +F+E  ++    +D+
Sbjct: 458 SFFNMFKKFASLKKSPYFKEANLNTRMLNDN 488


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 668 QWTIPFNTSSTSKLPFYNSKGEKIGEVNMM 579
           QW IPFN      L  +  K   +   ++M
Sbjct: 293 QWRIPFNGIQMPNLMVFYEKSLALAAFSLM 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,657
Number of Sequences: 438
Number of extensions: 3993
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)